View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380_high_4 (Length: 332)

Name: NF4380_high_4
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380_high_4
NF4380_high_4
[»] chr3 (1 HSPs)
chr3 (10-331)||(28988029-28988347)
[»] chr7 (1 HSPs)
chr7 (132-161)||(44572654-44572683)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 28988029 - 28988347
Alignment:
10 tcataggtagtgagttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtatccaaaacgcaccggtgtctgacactgacac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
28988029 tcataggtagtgagttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtgtccaaaacgcaccggtgtctgacactgacac 28988128  T
110 aacacctacacataaatcacctgtgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtctaagttagaattttggagctt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
28988129 aacacctacacataaatcacctgtgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtataagttagaattttggagctt 28988228  T
210 taaataattgtagtgtggtgggggaaaaataccttttcttctttcttttctctgaggttgtgtacattgattatgttaatgatgcttccgggttctgatt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||||    
28988229 taaataattgtagtgtggtgggggaaaaataccttttcttctttcttttctctgaggttgtgtac---gattatgttaatgatgcttctgggttctgatt 28988325  T
310 ttgagccctgttattttgtggc 331  Q
    ||||||||||||||||||||||    
28988326 ttgagccctgttattttgtggc 28988347  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 44572654 - 44572683
Alignment:
132 gtgtcgacgtatccgtgtcagtgtcgtgtc 161  Q
    ||||||||||||||||||||||||||||||    
44572654 gtgtcgacgtatccgtgtcagtgtcgtgtc 44572683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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