View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4380_high_6 (Length: 319)
Name: NF4380_high_6
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4380_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 50422064 - 50421762
Alignment:
| Q |
1 |
cttggctcctcaacaagagctaatttgcttgagtatgcatctatttttataagtagcatagcatgcatgttgcaaagtttacttttaacttctagttttc |
100 |
Q |
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| T |
50422064 |
cttggctcctcaacaagagctaatttgcttgagtatgcatctatttttataagtagcatagcatg----ttgcaaagtttacttttagcttctagttttc |
50421969 |
T |
|
| Q |
101 |
taccatactttctgacaacttcacacttttcgcttggataattgattttttatatcaatgtgtacttaatttatgaatgaatttttctcatcatcagaag |
200 |
Q |
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| T |
50421968 |
taccatactttctgacaacttcacacttttcgcttggataattgattttttatatcactgtgtacttaatttctgaatgaatttttttcatcatcagaag |
50421869 |
T |
|
| Q |
201 |
attcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcgatgtgatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50421868 |
attcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcgatgcgatct |
50421769 |
T |
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| Q |
301 |
gcctctc |
307 |
Q |
| |
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||||||| |
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| T |
50421768 |
gcctctc |
50421762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 50442027 - 50441913
Alignment:
| Q |
193 |
atcagaagattcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcga |
292 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||| ||||||||||||||||||| |
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| T |
50442027 |
atcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcga |
50441928 |
T |
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| Q |
293 |
tgtgatctgcctctc |
307 |
Q |
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| T |
50441927 |
tgcgatctgcttctc |
50441913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 50447018 - 50446921
Alignment:
| Q |
193 |
atcagaagattcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatc |
290 |
Q |
| |
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||||||| |||||||| | |||||| ||||||| ||||||||| ||||||| |||| || ||||| ||||||||| || |||||||||||||| |
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| T |
50447018 |
atcagaatattcaaggcaacagatatttctggaacggtgtcaaaaggggcaccagatttctgtacagtctatgtcattggcaatggaaagattcaatc |
50446921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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