View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380_high_6 (Length: 319)

Name: NF4380_high_6
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380_high_6
NF4380_high_6
[»] chr3 (3 HSPs)
chr3 (1-307)||(50421762-50422064)
chr3 (193-307)||(50441913-50442027)
chr3 (193-290)||(50446921-50447018)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 50422064 - 50421762
Alignment:
1 cttggctcctcaacaagagctaatttgcttgagtatgcatctatttttataagtagcatagcatgcatgttgcaaagtttacttttaacttctagttttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||||    
50422064 cttggctcctcaacaagagctaatttgcttgagtatgcatctatttttataagtagcatagcatg----ttgcaaagtttacttttagcttctagttttc 50421969  T
101 taccatactttctgacaacttcacacttttcgcttggataattgattttttatatcaatgtgtacttaatttatgaatgaatttttctcatcatcagaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||    
50421968 taccatactttctgacaacttcacacttttcgcttggataattgattttttatatcactgtgtacttaatttctgaatgaatttttttcatcatcagaag 50421869  T
201 attcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcgatgtgatct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
50421868 attcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcgatgcgatct 50421769  T
301 gcctctc 307  Q
    |||||||    
50421768 gcctctc 50421762  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 50442027 - 50441913
Alignment:
193 atcagaagattcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcga 292  Q
    |||||||||||||||||||  ||||||||||||||||||||||||  ||||||| ||||||| ||||| |||||||||   |||||||||||||||||||    
50442027 atcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcga 50441928  T
293 tgtgatctgcctctc 307  Q
    || ||||||| ||||    
50441927 tgcgatctgcttctc 50441913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 50447018 - 50446921
Alignment:
193 atcagaagattcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatc 290  Q
    ||||||| |||||||| |   |||||| ||||||| |||||||||  ||||||| |||| || ||||| |||||||||   || ||||||||||||||    
50447018 atcagaatattcaaggcaacagatatttctggaacggtgtcaaaaggggcaccagatttctgtacagtctatgtcattggcaatggaaagattcaatc 50446921  T

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