View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4380_low_1 (Length: 251)
Name: NF4380_low_1
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4380_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 28905985 - 28905765
Alignment:
| Q |
14 |
tactgaaccaacaagttacgttgaaacaactaaaaccttgaatcatcatgatgaagaaaccctaatgaattctcaaagcaatagctacgaagaaaagttc |
113 |
Q |
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| T |
28905985 |
tactgaaccaacaagttacgttgaaacaactaaaaccttgaatcatcatgatgaagaaaccctaatgaattctcaaagcaatagcttcgaagaaaagttc |
28905886 |
T |
|
| Q |
114 |
aaagagtgtagaaagaatcatgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaagggaccatcgaatttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28905885 |
aaagagtgtagaaagaatcatgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaagggaccatcgaatttt |
28905786 |
T |
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| Q |
214 |
tcaaatgcgccgcgtgtaact |
234 |
Q |
| |
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||||||||||||||||||||| |
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| T |
28905785 |
tcaaatgcgccgcgtgtaact |
28905765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 15978475 - 15978529
Alignment:
| Q |
137 |
ttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctgga |
191 |
Q |
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|||||| |||||||||||| |||||||||||||| | ||||||||||| |||||| |
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| T |
15978475 |
ttccagtattggaggctactctcttgatggttgtcgtgagtttttacctgctgga |
15978529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 32143088 - 32142868
Alignment:
| Q |
14 |
tactgaaccaacaagttacgttgaaacaactaaaaccttgaatcatcatgatgaagaaaccctaatgaattctcaaagcaatagctacgaagaaaagttc |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||| |
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| T |
32143088 |
tactgaaccaacaagttacgttgaaacaactacaacctcgaatgatcatgttgaagaaaccctaatgaattctcaaagcaatagctttgaaagaaacttc |
32142989 |
T |
|
| Q |
114 |
aaagagtgtagaaagaatcatgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaagggaccatcgaatttt |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32142988 |
aaagagtgtagaaagaatcacgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaaggaaccatcgaatttt |
32142889 |
T |
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| Q |
214 |
tcaaatgcgccgcgtgtaact |
234 |
Q |
| |
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||| ||| || |||||||||| |
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| T |
32142888 |
tcacatgtgctgcgtgtaact |
32142868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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