View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380_low_1 (Length: 251)

Name: NF4380_low_1
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380_low_1
NF4380_low_1
[»] chr8 (2 HSPs)
chr8 (14-234)||(28905765-28905985)
chr8 (137-191)||(15978475-15978529)
[»] chr2 (1 HSPs)
chr2 (14-234)||(32142868-32143088)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 28905985 - 28905765
Alignment:
14 tactgaaccaacaagttacgttgaaacaactaaaaccttgaatcatcatgatgaagaaaccctaatgaattctcaaagcaatagctacgaagaaaagttc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
28905985 tactgaaccaacaagttacgttgaaacaactaaaaccttgaatcatcatgatgaagaaaccctaatgaattctcaaagcaatagcttcgaagaaaagttc 28905886  T
114 aaagagtgtagaaagaatcatgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaagggaccatcgaatttt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28905885 aaagagtgtagaaagaatcatgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaagggaccatcgaatttt 28905786  T
214 tcaaatgcgccgcgtgtaact 234  Q
    |||||||||||||||||||||    
28905785 tcaaatgcgccgcgtgtaact 28905765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 15978475 - 15978529
Alignment:
137 ttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctgga 191  Q
    |||||| |||||||||||| |||||||||||||| | ||||||||||| ||||||    
15978475 ttccagtattggaggctactctcttgatggttgtcgtgagtttttacctgctgga 15978529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 32143088 - 32142868
Alignment:
14 tactgaaccaacaagttacgttgaaacaactaaaaccttgaatcatcatgatgaagaaaccctaatgaattctcaaagcaatagctacgaagaaaagttc 113  Q
    |||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||  |||  ||| |||    
32143088 tactgaaccaacaagttacgttgaaacaactacaacctcgaatgatcatgttgaagaaaccctaatgaattctcaaagcaatagctttgaaagaaacttc 32142989  T
114 aaagagtgtagaaagaatcatgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaagggaccatcgaatttt 213  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
32142988 aaagagtgtagaaagaatcacgcttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctggaattgaaggaaccatcgaatttt 32142889  T
214 tcaaatgcgccgcgtgtaact 234  Q
    ||| ||| || ||||||||||    
32142888 tcacatgtgctgcgtgtaact 32142868  T

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