View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381-Insertion-11 (Length: 542)
Name: NF4381-Insertion-11
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Original strand, 45209883 - 45210412
Alignment:
| Q |
9 |
ttaaggtataagtaaatcataatatgtgttgtcatagaaatagtctatgctataattaagtgctaaattaagttatttattcaaacagagctgataatta |
108 |
Q |
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| T |
45209883 |
ttaaggtataagtaaatcataatatgtgttgtcatagaaatagtctatgctataa----gtgctaaattaagttatttattcaaacagagctgataatta |
45209978 |
T |
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| Q |
109 |
tacgacaacttaggagaattggtagtcgtaggtttacaaaatatacttacaaattgcttcagtcactctcctttcgttcggtgatgtgaattcagtaagt |
208 |
Q |
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| T |
45209979 |
tacgacaacttaggagaattggtagtcgtaggtttacaaaatatacttacaaattgcttcagtcactctcctttcgttcggtgatgtgaattcagtaagt |
45210078 |
T |
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| Q |
209 |
tccgcaatttttggttggttgcatgtataacctggtcctggtgttttcaaagtgaaattctgcggcgctatgatggcagttttgttattgccagctctac |
308 |
Q |
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| T |
45210079 |
tccgcaatttttggttggttgcatgtataacctggtcctggtgttttcaaagtgaaattctgcggcgctatgatggcagttttgttattgccagctctac |
45210178 |
T |
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| Q |
309 |
cgacactgacttgaaacgctgcaactgcatttggcggatcttgtgcccatgttcttagttcaccacctttgcagcaatttgcaaattgtttattatagga |
408 |
Q |
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| T |
45210179 |
cgacactgacttgaaacgctgcaactgcatttggcggatcttgtgcccatgttcttagtacaccacctttgcagcaatttgcaaattgtttattataggg |
45210278 |
T |
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| Q |
409 |
cgttccagggcgcaagtctataattgttggatccttcttacaacaatgtgggaaggtttccgtaaactctgagcaatctccttgatcagttgcttcccct |
508 |
Q |
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| T |
45210279 |
cgttccagggtgcaagtctataattgttggatccttcttacaacaatgtgggaaggtttccgtaaactctgagcaatctccttgatcagttgcttcccct |
45210378 |
T |
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| Q |
509 |
cccaccacggcccatatgatctctttctctaccc |
542 |
Q |
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| T |
45210379 |
cccaccacagcccatatgatctctttctctaccc |
45210412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 525
Target Start/End: Original strand, 5540908 - 5541203
Alignment:
| Q |
230 |
catgtataacctggtcctggtgttttcaaagtgaaattctgcggcgctatgatggcagttttgtta-ttg--ccagctctaccgacactgacttgaaacg |
326 |
Q |
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| T |
5540908 |
catgtataacctggtccaggtgctttcaaggtgaaatttttcggcagtttga---cagttttgttagttgtaccagctctatcgacgctgacttgaaatg |
5541004 |
T |
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| Q |
327 |
ctgcaactgcatttggcggatcttgtgcccatgttcttagttcaccacctttgcagcaatttgcaaattgtttattataggacgttccagggcgcaagtc |
426 |
Q |
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| T |
5541005 |
ctgaaaccgcatttattggatcctgttcccatgagctaagaacaccgcctctgcaacaatttgcaatttgttgattattaggcgtccctggaagtaagtc |
5541104 |
T |
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| Q |
427 |
tataattgttggatccttcttacaacaatgtgggaaggtttccgtaaactctgagcaatctccttgatcagttgcttcccctcccaccacggcccatat |
525 |
Q |
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| T |
5541105 |
tatgactgttggatgttttttacagcaatgtgggatggttcctttaaaatttgaacaatctcctagttcagttgtctgacctcccacgatggcccatat |
5541203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 5549816 - 5549722
Alignment:
| Q |
297 |
tgccagctctaccgacactgacttgaaacgctgcaactgcatttggcggatcttgtgcccatgttcttagttcaccacctttgcagcaatttgca |
391 |
Q |
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| T |
5549816 |
tgccagctctaccaacaataacctgaaatgacgcaactgcatttgttggatcctgtgcccatgagctgagtactccacctttgcaacaatttgca |
5549722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 5007256 - 5007166
Alignment:
| Q |
302 |
gctctaccgacactgacttgaaacgctgcaactgcatttggcggatcttgtgcccatgttcttagttcaccacctttgcagcaatttgcaa |
392 |
Q |
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| T |
5007256 |
gctctaccaacactgatttgaaacgccccaactgccatggtaggatcttgagcccatgaactaagcacaccacctttgcagcaatttgcaa |
5007166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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