View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381-Insertion-12 (Length: 540)
Name: NF4381-Insertion-12
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 9395011 - 9395351
Alignment:
| Q |
8 |
tttaggcattgttgaggtgaaggagaaaataagtgcttgttttttgttagnnnnnnnnnnnnnnnngaaggtgaatagtgaaagctgtgaagnnnnnnng |
107 |
Q |
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| T |
9395011 |
tttaggcattgttgaggtgaaggagaaaataagtacttgttttttgttaggagaagagagagagaagaaggtgaatagtgaaagctgtgaacaaaaaaag |
9395110 |
T |
|
| Q |
108 |
cgattattgtaaatgaaagagaagaaaagaagcggttttgaactgaagcgggaaaatgaattgaatagtgcgcttttaattttgactacttttcatttcc |
207 |
Q |
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| T |
9395111 |
cgattattataaatgaaagagaagaaaagaagcggttttgaactgaagcgggaaaatgaattgaatcgtgcacttttaattttgactacttttcatttcc |
9395210 |
T |
|
| Q |
208 |
cgcacttgaacccgctcagtgtgaatggaaattattaaatgnnnnnnnnacggtgttcatggaaatggagtgaagtaattttccactcctatcctatgtt |
307 |
Q |
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| T |
9395211 |
cgcacttgaacccgctcagtgtgaatggaaattattaaatgttttttttacggtgtgaatggaaatagagtgaagtaattttccactcctat----tgtt |
9395306 |
T |
|
| Q |
308 |
aatggggaccaaagagtaagaatttaatacattataaaaatatta |
352 |
Q |
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| T |
9395307 |
aatggggaccaaagagtaagaatttaatacattataaaaatatta |
9395351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 351 - 540
Target Start/End: Original strand, 9395479 - 9395668
Alignment:
| Q |
351 |
tattatttaaacgttaattgcaatttggcccattggtattgtctttatcgcaagaacaaaagaatgtctttttcccaaaggtgtggatatagactttcag |
450 |
Q |
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| T |
9395479 |
tattatttaaacgtcaattgcaatttggcccattggtattgtctctatcgaaagaacaaaagaatgtcttttttccaaaggtgtggatatagaccttcag |
9395578 |
T |
|
| Q |
451 |
tgggtttattctaacaaaagtcaggtattacattttggcttatggagtttctgagatagacttcctttgtaaaaaggacgtgggttaaga |
540 |
Q |
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| T |
9395579 |
tgggtttattctaacaaaagtcatgtattacattttgtcttagggagtttcagagatagaattcctttgtaaaaaggacgtgggtaaaga |
9395668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 31944516 - 31944723
Alignment:
| Q |
8 |
tttaggcattgttgaggtgaaggagaaaataagtgcttgttttttgttagnnnnnnnnnnnnnnnngaaggtgaatagtgaaagctgtgaagnnnnnnng |
107 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| | |
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| T |
31944516 |
tttaggcattattgaggtgaaagagaaaataagtgcttattttttgttaggagaagagagaa----gaaggtggatagtgaaagctgtgaagaaaaaa-g |
31944610 |
T |
|
| Q |
108 |
cgattattgtaaatgaaagagaagaaaaga-----agcggttttgaactgaagcgggaaaatgaattgaatagtgcgcttttaattttgactacttttca |
202 |
Q |
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|||||||| |||||||||||||||| |||| ||| ||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
31944611 |
cgattattataaatgaaagagaagagaagagaagaagcagttttaaattgaagcgggaaaatgaattgaatattgcgcttttaattttcgctacttttca |
31944710 |
T |
|
| Q |
203 |
tttcccgcacttg |
215 |
Q |
| |
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||||| ||||||| |
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| T |
31944711 |
tttccagcacttg |
31944723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 31944758 - 31944843
Alignment:
| Q |
272 |
atggagtgaagtaattttccactcctatcctatgttaatggggaccaaagagtaagaatttaatacattataaaaatattattattt |
358 |
Q |
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|||||||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||||||||| ||||| || | |||||||||| |
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| T |
31944758 |
atggagtgaagtaattttccactcctatattatattagt-gggaccaaaaagtaagaatttaatatattattaataaattattattt |
31944843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 1342649 - 1342749
Alignment:
| Q |
151 |
tgaagcgggaaaatgaattgaatagtgcgcttttaattttgactacttttc---atttcccgcacttg---aacccgctcagtgtgaatggaaattatta |
244 |
Q |
| |
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|||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| || ||| |
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| T |
1342649 |
tgaagcgggaaaatgaatc-aatattgcgcttacaattttcgctacttttcttcatttcccgcacttgttgaacccgctcagtgtaaatggaatttgtta |
1342747 |
T |
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| Q |
245 |
aa |
246 |
Q |
| |
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|| |
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|
| T |
1342748 |
aa |
1342749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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