View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381-Insertion-13 (Length: 363)
Name: NF4381-Insertion-13
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-13 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 40 - 363
Target Start/End: Original strand, 37902275 - 37902598
Alignment:
| Q |
40 |
ccagtgccaggatacgtaaaattaaacaaagacttgaaacaagttgaatgattagttaatactaaccctatagcccccatcaaacattgcacgaaatgta |
139 |
Q |
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| T |
37902275 |
ccagtgccaggatacgtaaaattaaacgaagacttgaaacaagttgaatgattagttaatactaaccctatagcccccatcaaacattgcacgaaatgta |
37902374 |
T |
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| Q |
140 |
tcagaagaagaaagtaaacaractctatgagcataaaagcttttgcctgaagaagggagaacaaactgaattagtacataaataagaatcaatatgcata |
239 |
Q |
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| T |
37902375 |
tcagaagaagaaagtaaacaaactctatgagcataaaagcttttgcctgaagaagggagaacaaactgaattagtacataaataagaatcaatatgcata |
37902474 |
T |
|
| Q |
240 |
caaccaaaaaattgacagaaaacgataacaaaaactgtggcagcttatttaccttcaactatgaatgtgacatcagaaagtttaggattgtttacatatt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37902475 |
caaccaaaaaattgacagaaaacgataacaaaaactgtggcagcttatttaccttcaactatgaatgtgacatcagaaagtttaggattgtttacgtatt |
37902574 |
T |
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| Q |
340 |
gctcacccaagtaaacctgcatac |
363 |
Q |
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| T |
37902575 |
gctcacccaagtaaacctgcatac |
37902598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 40 - 363
Target Start/End: Original strand, 37908786 - 37909109
Alignment:
| Q |
40 |
ccagtgccaggatacgtaaaattaaacaaagacttgaaacaagttgaatgattagttaatactaaccctatagcccccatcaaacattgcacgaaatgta |
139 |
Q |
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| T |
37908786 |
ccagtgccaggatacgtaaaattaaacgaagacttgaaacaagttgaatgattagttaatactaaccctatagcccccatcaaacattgcacgaaatgta |
37908885 |
T |
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| Q |
140 |
tcagaagaagaaagtaaacaractctatgagcataaaagcttttgcctgaagaagggagaacaaactgaattagtacataaataagaatcaatatgcata |
239 |
Q |
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| T |
37908886 |
tcagaagaagaaagtaaacaaactctatgagcataaaagcttttgcctgaagaagggagaacaaactgaattagtacataaataagaatcaatatgcata |
37908985 |
T |
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| Q |
240 |
caaccaaaaaattgacagaaaacgataacaaaaactgtggcagcttatttaccttcaactatgaatgtgacatcagaaagtttaggattgtttacatatt |
339 |
Q |
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| T |
37908986 |
caaccaaaaaattgacagaaaacgataacaaaaactgtggcagcttatttaccttcaactatgaatgtgacatcagaaagtttaggattgtttacgtatt |
37909085 |
T |
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| Q |
340 |
gctcacccaagtaaacctgcatac |
363 |
Q |
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| T |
37909086 |
gctcacccaagtaaacctgcatac |
37909109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 37902213 - 37902257
Alignment:
| Q |
7 |
agttacagctaatggatgcataaaatttgaaagccagtgccagga |
51 |
Q |
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| T |
37902213 |
agttacagctaatggatgcataaaatttgaaagccagtgccagga |
37902257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 37908724 - 37908768
Alignment:
| Q |
7 |
agttacagctaatggatgcataaaatttgaaagccagtgccagga |
51 |
Q |
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| T |
37908724 |
agttacagctaatggatgcataaaatttgaaagccagtgccagga |
37908768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 47276495 - 47276405
Alignment:
| Q |
98 |
atactaaccctatagcccccatcaaacattgcacgaaatgtatcagaagaagaaagtaaacaractctatgagcataaaagcttttgcctg |
188 |
Q |
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| T |
47276495 |
atactcaccctataaccaccatcaaacattgcacgaaatgcatctgaagatgccagtagacaaattctatgagcataaaaacgtttgcctg |
47276405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 677710 - 677779
Alignment:
| Q |
104 |
accctatagcccccatcaaacattgcacgaaatgtatcagaagaagaaagtaaacaractctatgagcat |
173 |
Q |
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| T |
677710 |
accctataaccaccatcaaacatcgcacgaaatgcatctgaagatgcaagtagacagattctatgagcat |
677779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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