View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381-Insertion-2 (Length: 1015)
Name: NF4381-Insertion-2
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 480 - 998
Target Start/End: Original strand, 7166469 - 7166978
Alignment:
| Q |
480 |
caaagaagaaaagaaggatatggaaattgcagtacctctccgattcgatgctgggcgacactaaaactaaacaaccatacaacttggttgacgaaacctg |
579 |
Q |
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| T |
7166469 |
caaagaagaaaagaaggatatggaaattgcagtacctctcctattcgatgct----------aaaactaaacaaccatacaacttggttgacgaaacctg |
7166558 |
T |
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| Q |
580 |
tggcggatggatctttccggtgagggatggccgagaactcgtcaaatattgcgacatgatatcccttgtgctttgtcatcagcgtcaacaaatcctttgg |
679 |
Q |
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| T |
7166559 |
tggcggatggatctttccggtgagggatggccgagaactcgtcaaatattgcgacatgatatcccttgtgctttgtcattagcgtcaacaaaccctttgg |
7166658 |
T |
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| Q |
680 |
cttgcacactaattgatcaatgggtgagaacgcacaactctaaactcaaac-aaaattacatagtagcatatccgagatatcattgatgtaatnnnnnnn |
778 |
Q |
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| T |
7166659 |
cttgcacactaattgatcaatgggtgagaacgcacaactctaaactcaaacaaaaattacatagtagcatatccgagatatcattgatgtaat--aaaaa |
7166756 |
T |
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| Q |
779 |
nntctaagatatcaaaataaacaagggtttatactgtttttgtcatgtaataagtttagattttatcattaacatatttttatttgtcatgtaataagtt |
878 |
Q |
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| T |
7166757 |
aatctaagatatcaaaataaataagggtttatactgtttttgtcatgtaataagtttagattttatcattaacatatttttatttgtcatgtaataagtt |
7166856 |
T |
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| Q |
879 |
tagaatttatcttgaacatattttttatttgggaatacataagggtcgaagctacaatat-cttaacattttagattcttcaattttaat-cttcattt- |
975 |
Q |
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| T |
7166857 |
tagaatttatctttaacata-tttttattt-ggaatacataagggtcgaagctacaatatccttaacattttagattcttcaattttaatccttcattta |
7166954 |
T |
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| Q |
976 |
actttagtca-ttgaatatgtgta |
998 |
Q |
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| T |
7166955 |
actttagtcatttgaatatgtgta |
7166978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 8 - 373
Target Start/End: Original strand, 7165995 - 7166359
Alignment:
| Q |
8 |
tattttttggtcaagttatatcttattacaattgtaataagactatttttgtgaacaaaattaaacaaactgtgt--ttattactt-gttaatttctctc |
104 |
Q |
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| T |
7165995 |
tattttttggtcaagttttatcttattacaattgtaataagactacttttgtgaacaaaa----acaaactgtgtgttttttactttgttaatttctctc |
7166090 |
T |
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| Q |
105 |
gtctctgatcaccccgttttctttgaaaaaatcatcaacggatatatcattgaaatcaatgactcatatttgctatgatttaaacactcgtgataatcct |
204 |
Q |
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| T |
7166091 |
gtctttgatcaccccgttttctttgaaaaaatcatcaacggatatatcattgaaatcaatgactcatatttgctatgattcaaacactcgtgataatcct |
7166190 |
T |
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| Q |
205 |
nnnnnnntgaatatgatccatactcataattctnnnnnnnntgtattttttaaaacaaatgtcttatttgcactatagctcccctattttatcaatttca |
304 |
Q |
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| T |
7166191 |
aaaaaaatgtatatgatccatactcataattctaaaaaaaatgtattttttaaaacaaatgtcttatttgcactatagctcccctattttatcaatttca |
7166290 |
T |
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| Q |
305 |
caaaaataattctttttaaaaaattagacattttggtccttcaaatatcagtaaaccaaatttttcatg |
373 |
Q |
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| T |
7166291 |
caaaaataattctttttaaaaaattagacattttgatccttcaaatatcagtaaaccaaatttttcatg |
7166359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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