View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381-Insertion-6 (Length: 774)
Name: NF4381-Insertion-6
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 284 - 774
Target Start/End: Complemental strand, 31320739 - 31320246
Alignment:
| Q |
284 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctaccaatgtttttgttctt---taa |
380 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||| |
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| T |
31320739 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
31320640 |
T |
|
| Q |
381 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
480 |
Q |
| |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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| T |
31320639 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
31320540 |
T |
|
| Q |
481 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
580 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
31320539 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
31320440 |
T |
|
| Q |
581 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgatt |
680 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31320439 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
31320340 |
T |
|
| Q |
681 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaa |
774 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320339 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaa |
31320246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 284 - 774
Target Start/End: Complemental strand, 31332992 - 31332499
Alignment:
| Q |
284 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctaccaatgtttttgttctt---taa |
380 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||| |
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| T |
31332992 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
31332893 |
T |
|
| Q |
381 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
480 |
Q |
| |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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| T |
31332892 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
31332793 |
T |
|
| Q |
481 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
580 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
31332792 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
31332693 |
T |
|
| Q |
581 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgatt |
680 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31332692 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
31332593 |
T |
|
| Q |
681 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaa |
774 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332592 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattttggaatccttcttgtgtacaa |
31332499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 284 - 774
Target Start/End: Original strand, 2931 - 3424
Alignment:
| Q |
284 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctaccaatgtttttgttctt---taa |
380 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||| |
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| T |
2931 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
3030 |
T |
|
| Q |
381 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
480 |
Q |
| |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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|
| T |
3031 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
3130 |
T |
|
| Q |
481 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
580 |
Q |
| |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
3131 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
3230 |
T |
|
| Q |
581 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgatt |
680 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3231 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
3330 |
T |
|
| Q |
681 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaa |
774 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattttggaatccttcttgtgtacaa |
3424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 712
Target Start/End: Original strand, 33521947 - 33522105
Alignment:
| Q |
559 |
tcagctttgcatcctgttattatcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttc-----tcaccttttggacaacc |
653 |
Q |
| |
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||||||||||||| ||||| ||| |||||| | | ||| |||||||| |||||||||||| | | ||||||||||| || ||||||| |||||| |
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|
| T |
33521947 |
tcagctttgcatcttgttagtattacagcaccgtgttccacagcatcgacaagccatgtaacatcggtcccttgttttgtttatctccttttgtacaacc |
33522046 |
T |
|
| Q |
654 |
ataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaactt |
712 |
Q |
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||| ||| |||||||| ||||||| | ||| ||||||||| ||||||||||| |||| |
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| T |
33522047 |
atagttacaagaaccacagtaatgatgctctgatgaatttctcggcacataatcgactt |
33522105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 24154767 - 24154725
Alignment:
| Q |
50 |
ttaggagaagattaacaaactatctaaaatcttaacaaactaa |
92 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
24154767 |
ttaggagaagattaacaaactaactaaaatcttaactaactaa |
24154725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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