View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381-Insertion-7 (Length: 766)
Name: NF4381-Insertion-7
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 372 - 578
Target Start/End: Complemental strand, 34273806 - 34273600
Alignment:
| Q |
372 |
atcgaatgtatttgtagttgaatagattggaagatagtggataattgaatgcgatatttattaatttttggagtaagtagctagcttactaatagtaatt |
471 |
Q |
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| T |
34273806 |
atcgaatgtatttgtagttgaatagattggaagatagtggataattgaatgcgatatttattaatttttggagtaagtagctatcttactaatagtaatt |
34273707 |
T |
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| Q |
472 |
gcatttgggtgggagttttccatcatgcatatcctctccagcccaagaaactctgcaacctccgccaactcaaggccccaacttttccataatgagttaa |
571 |
Q |
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| T |
34273706 |
gcatttgggtgggagttttccatcatgcatatcctctccagcccaagaaactctgcaacctccgccaactcaaggccccaacttttccataatgagttaa |
34273607 |
T |
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| Q |
572 |
taaaaag |
578 |
Q |
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| T |
34273606 |
taaaaag |
34273600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 34274136 - 34273821
Alignment:
| Q |
11 |
ttgtggtttctgaagccattaatgttataaacaagaagagctttgctcgtaaattgacacttaaaattaatatcagaaaggatttcgatactttggaccg |
110 |
Q |
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| T |
34274136 |
ttgtggtttctaaggccattaatgttataaacaaaaagagattttctagtaatttgactcttaaaattaatttcagaaaggattttaataatttggaccg |
34274037 |
T |
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| Q |
111 |
gaacttctttcttgatgtgcttgcttgctttacttttggccccattttctgtaacttgattaaggaaatcttacactaa----gnnnnnnnacacacann |
206 |
Q |
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| T |
34274036 |
gaacttctttcttcatgtgcttgctcgctttacttttggccccattttctgtaacttgattaaggaaatcttacactaaacccacacacacacacacatt |
34273937 |
T |
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| Q |
207 |
nnnnncttcttttatttaaatatatgaacacttgacagaggattagagaatactaagaggtgtcaacctt-ttagagaatactattctgtttgatgtcat |
305 |
Q |
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| T |
34273936 |
tttttcttcttttatttaaatatatgaacacttgacagaggattagagaatactaagaggtgtcaaccttgttagagaatactattctgtttgatgtcat |
34273837 |
T |
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| Q |
306 |
tatgattttggcttcg |
321 |
Q |
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| T |
34273836 |
tatgattttggcttcg |
34273821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 639 - 749
Target Start/End: Complemental strand, 34273541 - 34273431
Alignment:
| Q |
639 |
cattaagtgatataagttgatttattataaattcaacaactccatatgcattagggattacttaggtttttattacttgttgcgcttacttataacataa |
738 |
Q |
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| T |
34273541 |
cattaagtgatataagttgatttattataaattcaacaactccatatgcattagggattacttaggtttttattacttgttgcgcttacttataacataa |
34273442 |
T |
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| Q |
739 |
aatcatcaaca |
749 |
Q |
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| T |
34273441 |
aatcatcaaca |
34273431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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