View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4381-Insertion-8 (Length: 730)
Name: NF4381-Insertion-8
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 77 - 528
Target Start/End: Complemental strand, 41994752 - 41994298
Alignment:
| Q |
77 |
aaatgaagagcatagttatggaaattgatctctctgnnnnnnnnggcttatttatgacatatttgtatggttaccataaactttgttattgttttctgga |
176 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41994752 |
aaatgaagagcttagttatggaaattgatctctctgttttttttggcttatttatgacatatttgtatggttaccataaactttgttattgttttttgga |
41994653 |
T |
|
| Q |
177 |
ctatatatcgtcaaaataatgttaaacaatatgttactactaactattttaaccattgagagttagatccagtaaaagggactagtcttctacagtatga |
276 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41994652 |
ctatatatcgtcaaaaaaatgttaaacaatatgttacttctaactattttaaccattgagagttagatccagtaaaagggactagtgttctacagtatga |
41994553 |
T |
|
| Q |
277 |
cgaaacaatgtttaaatattgattaagagagatatacatgtttaatgtctaaccgtctgacgtctcaaatattattacctcaaatagagagaaact--at |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
41994552 |
cgaaacaatgtttaaatattgattaagagaggtatacatgtttaatgtctaaccgtctgacgtctcaaatatgattacctcaaatagagagaaactatat |
41994453 |
T |
|
| Q |
375 |
atnnnnnnnnnngtatacatatatttcaatgttgaaaactagaaactttcatttatt-aaaatatagtaaaaattttatttatcctattaaaattgtcta |
473 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
41994452 |
ataaaaaaaaaagtatacatatatttcaatgttgaaaactagaaactttcatttattaaaaatataataaaaaatttatttatcctattaaaattgtcta |
41994353 |
T |
|
| Q |
474 |
atccaaatattcattaattatatttttgtaaacaaagtaacgaaatacaacgaag |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41994352 |
atccaaatattcattaattatatttttgtaaacaaagtaacaaaatacaacgaag |
41994298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 41994811 - 41994767
Alignment:
| Q |
8 |
ccgttctcatgt-atctaactgggggctaggatacatttgaaaac |
51 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
41994811 |
ccgttctcatgttatctaactgggggctagaatacatttgaaaac |
41994767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University