View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4381-Insertion-9 (Length: 716)
Name: NF4381-Insertion-9
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381-Insertion-9 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] scaffold0623 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 199 - 716
Target Start/End: Complemental strand, 46664485 - 46663968
Alignment:
| Q |
199 |
aagctgctggaacataaaattctatttgttacaagaagatattggagctgtgtttaattgagcaggtaatgcagcatgatccatgttaatagagttataa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664485 |
aagctgctggaacataaaattctatttgttacaagaagatattggagctgtgtctaattgagcaggtaatgcagcatgatccatgttaatagagttataa |
46664386 |
T |
|
| Q |
299 |
ctttcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggac |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664385 |
ctttcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggac |
46664286 |
T |
|
| Q |
399 |
agtgggattggtccccggattagtcggtattgggctgaataccgagttttcaaaataaaaatagagtatataacttcttatagattaatccatgagtaat |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664285 |
agtgggattggtccccggattagtcggtattgggctgaataccgagttttcaaaataaaaatagagtatataacttcttatagattaatccatgagtaat |
46664186 |
T |
|
| Q |
499 |
tagtaaagtcggatgtcatgaatatgtgctattcttaatttcttaatacaatgtgttcttgtattgatgttaggtaaaagaagaggagatctatatactg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664185 |
tagtaaagtcggatgtcatgaatatgtgctattcgtaatttcttaatacaatgtgttcttgtattgatgttaggtaaaagaagaggagatctatatactg |
46664086 |
T |
|
| Q |
599 |
atagcaaggcctggattcattatcaggactttgcagtcttgcaaaatccaaaccagctttgctgttgttatttgctggggttatggcaaccatgttgcat |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664085 |
atagcaaggcctggattcattatcaggactttgcagtcttgcaaaatccaaaccagctttgctgttgttatttgctggggttatggcaaccatgttgcat |
46663986 |
T |
|
| Q |
699 |
tctgactccaggcgctta |
716 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46663985 |
tctgactccaggcgctta |
46663968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 46664688 - 46664596
Alignment:
| Q |
8 |
ctccactggttatttaattttaannnnnnnnagcaatttgatgcgtatgatttttgcttttcatgttcaagatctctcagattctgcaaaaga |
100 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664688 |
ctccactggttatttaatttttattttttttagcaatttgatgcgtatgatttttgcttttcatgttcaagatctctcagattctgcaaaaga |
46664596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 425
Target Start/End: Original strand, 37047040 - 37047165
Alignment:
| Q |
302 |
tcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagt |
401 |
Q |
| |
|
|||||||||| ||||||| ||| || ||| | ||||| || || | ||||||||||||| ||||||| |||||||||| ||||| | ||||||| || |
|
|
| T |
37047040 |
tcaaggtctcaggtttgattccccctggtacaaattttggtgggctagtccatacagagctttgctctagctttaaatggggcccccacaagtggacggt |
37047139 |
T |
|
| Q |
402 |
gggattggtcccc--ggattagtcgg |
425 |
Q |
| |
|
|||||||| |||| ||||||||||| |
|
|
| T |
37047140 |
gggattggacccctaggattagtcgg |
37047165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 431
Target Start/End: Complemental strand, 47360534 - 47360403
Alignment:
| Q |
302 |
tcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagt |
401 |
Q |
| |
|
||||| |||| |||| |||||||||| ||| ||||||||| || | |||||||| |||| ||||||| |||||||||| ||| ||||||||| | |
|
|
| T |
47360534 |
tcaagatctcaggttcgaatcctcccagtgtcaatttctgcgggctagtccatacggagctttgctctggctttaaatggcccccccgctagtggatgat |
47360435 |
T |
|
| Q |
402 |
gggattggt--ccccggattagtcggtattgg |
431 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |
|
|
| T |
47360434 |
gggattggcacccccggattagtcggtcttgg |
47360403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 459
Target Start/End: Original strand, 32729619 - 32729752
Alignment:
| Q |
328 |
ggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtcccc--ggattagtcgg |
425 |
Q |
| |
|
|||||||||||| || || ||||||||||||| ||||||| |||||||||| || || || ||||| | ||||||||| ||||| ||||||||||| |
|
|
| T |
32729619 |
ggtgccaatttcggtgggcaagtccatacagagc-ttgctctggctttaaatggggtccccgcaagtgggcggtgggattgatccccttggattagtcgg |
32729717 |
T |
|
| Q |
426 |
tattgggct-gaataccgagttttcaaaataaaaa |
459 |
Q |
| |
|
| || || | | ||||||||||||||||| ||||| |
|
|
| T |
32729718 |
tctttggatcggataccgagttttcaaaaaaaaaa |
32729752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 7197367 - 7197272
Alignment:
| Q |
330 |
tgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcg |
424 |
Q |
| |
|
|||||||||| || ||| ||| ||||||| ||||||||| |||||||| ||||||| ||| ||||| | ||| |||||||||| ||||||||||| |
|
|
| T |
7197367 |
tgccaatttcggtgggtaagtcaatacaga-ccttgctctggctttaaacgaggcccctgcaagtgggcggtgagattggtcccctcggattagtcg |
7197272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 12877037 - 12876973
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtcccc |
414 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||| || ||||||| ||||||||||||||| |
|
|
| T |
12877037 |
gtccatacagagc-ttgctctagctttaaacggggcccccgcaagtggacggtgggattggtcccc |
12876973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 48977438 - 48977562
Alignment:
| Q |
304 |
aaggtctccggtttgaatcctcccggtgccaatttctgttggttt-gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtg |
402 |
Q |
| |
|
|||||||| |||| || |||| | |||||||||||| || |||| ||||||||||||| ||||||| |||||||| | ||||| ||| ||||| | ||| |
|
|
| T |
48977438 |
aaggtctcaggttcgattccttctggtgccaatttcggtgggttaagtccatacagagc-ttgctctggctttaaacggggcccctgcaagtgggcggtg |
48977536 |
T |
|
| Q |
403 |
ggattggtccc--cggattagtcggt |
426 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
48977537 |
ggattggtcccctcggattagtcggt |
48977562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 466
Target Start/End: Original strand, 51532885 - 51533004
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccccg--gattagtcggta-ttgggctgaataccgagt |
445 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| | ||| || ||||||| ||||||||||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
51532885 |
gtccatacagagc-ttgctctaactttaaatgggacccccgcaagtggacggtgggattggtcccctcagattagtcggttcttgatccgaataccgagt |
51532983 |
T |
|
| Q |
446 |
tttcaaaataaaaatagagta |
466 |
Q |
| |
|
|||||||| ||||| |||||| |
|
|
| T |
51532984 |
tttcaaaaaaaaaaaagagta |
51533004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 10538228 - 10538122
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccccgga--ttagtcggtattgggctgaataccgagtt |
446 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||| | || || |||||||||||||||||| |||| | ||||||||| || ||||| |||||||||| |
|
|
| T |
10538228 |
gtccatacaaagctttgctctagctttaaatgggacctacgcaagtggacagtgggattggacccctcaaattagtcggtcttaggctggataccgagtt |
10538129 |
T |
|
| Q |
447 |
ttcaaaa |
453 |
Q |
| |
|
|| |||| |
|
|
| T |
10538128 |
tttaaaa |
10538122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 8456251 - 8456175
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcg |
424 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||| || ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
8456251 |
gtccatacagagc-ttgctctggctttaaacggggcccccgcaagtgggcagtgggattggtcccctcggattagtcg |
8456175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 10190843 - 10190767
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcg |
424 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||| || ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
10190843 |
gtccatacagagc-ttgctctggctttaaacggggcccccgcaagtggacggtgggattggtcccctcggattagtcg |
10190767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 458
Target Start/End: Original strand, 35493007 - 35493118
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcg-gtattgggctgaataccgagt |
445 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||| || ||||| | |||||||||||||| ||||||||||| | |||| |||||||||||| |
|
|
| T |
35493007 |
gtccatacagagc-ttgctctggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggattgaataccgagt |
35493105 |
T |
|
| Q |
446 |
tttcaaaataaaa |
458 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
35493106 |
tttaaaaaaaaaa |
35493118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 411
Target Start/End: Original strand, 9208300 - 9208409
Alignment:
| Q |
302 |
tcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagt |
401 |
Q |
| |
|
|||||||||| |||| || ||| || |||||||||||| || || ||||||||||||||||||| | |||||||||| ||||| || ||||| | || |
|
|
| T |
9208300 |
tcaaggtctcaggttcgattccccctggtgccaatttcggtgggcaagtccatacagagccttgctttggctttaaatggggcccccgcaagtgggcggt |
9208399 |
T |
|
| Q |
402 |
gggattggtc |
411 |
Q |
| |
|
|||||||||| |
|
|
| T |
9208400 |
gggattggtc |
9208409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 17149605 - 17149493
Alignment:
| Q |
302 |
tcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagt |
401 |
Q |
| |
|
|||||||||| |||| || ||| | ||||| |||||| ||||| ||||||||||||||||||| | |||||||||| ||||| || |||| || || |
|
|
| T |
17149605 |
tcaaggtctcaggttcgattccctctggtgctaatttcggttggcaagtccatacagagccttgctttggctttaaatggggcccccgcaagtgaacggt |
17149506 |
T |
|
| Q |
402 |
gggattggtcccc |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17149505 |
gggattggtcccc |
17149493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 13747653 - 13747576
Alignment:
| Q |
303 |
caaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatg |
380 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| ||||| || || | |||||||||| || ||||||| |||||||||| |
|
|
| T |
13747653 |
caaggtctcaggtttgaatccccccggtgccgatttcggtgggctagtccatacagtgctttgctctggctttaaatg |
13747576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 353 - 448
Target Start/End: Original strand, 44610139 - 44610236
Alignment:
| Q |
353 |
atacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcgg-tattgggctgaataccgagtttt |
448 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||| ||| ||||| | |||||||||||||| |||||||||||| | |||| | |||||||||||||| |
|
|
| T |
44610139 |
atacagagc-ttgctctagctttaaatggggcccctgcaagtgggcggtgggattggtcccatcggattagtcggttcttggaccgaataccgagtttt |
44610236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 40382139 - 40382105
Alignment:
| Q |
389 |
gctagtggacagtgggattggtccccggattagtc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40382139 |
gctagtggacagtgggattggtccccggattagtc |
40382105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 34516514 - 34516439
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcg |
424 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||| ||| ||||| | |||||||||||||| ||||||||||| |
|
|
| T |
34516514 |
gtccatacagagc-ttgctctcgctttaaacg-ggcccctgcaagtgggcggtgggattggtcccctcggattagtcg |
34516439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 40381881 - 40381808
Alignment:
| Q |
390 |
ctagtggacagtgggattggtccccggattagtcggt-attgggctgaataccgagttttcaaaataaaaatag |
462 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||||| | ||| |||||||||| |||||||||| |
|
|
| T |
40381881 |
ctagtggacggtgggattggtctaaggattagtcggtcattgggccggatattgagttttcaagataaaaatag |
40381808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 459
Target Start/End: Original strand, 4603873 - 4603985
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcggt-attgggctgaataccgagt |
445 |
Q |
| |
|
||||||||||||| | ||||| |||||||| | ||||| ||| ||||||| |||||||||||||| ||||||||||||| |||| | ||||||||| |
|
|
| T |
4603873 |
gtccatacagagc-tcgctctggctttaaacggggcccctgcaagtggacggtgggattggtcccctcggattagtcggtccttggatcggataccgagt |
4603971 |
T |
|
| Q |
446 |
tttcaaaataaaaa |
459 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
4603972 |
tttcaaaaaaaaaa |
4603985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 19145560 - 19145449
Alignment:
| Q |
302 |
tcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagt |
401 |
Q |
| |
|
||||||||||||||| || ||| | |||||||||||| || || ||||||||||||| ||||||| |||||||||| | ||| || ||||| | || |
|
|
| T |
19145560 |
tcaaggtctccggttcgattccctctggtgccaatttcggtgggcaagtccatacagagctttgctctggctttaaatg-gtcccccgcaagtgggcggt |
19145462 |
T |
|
| Q |
402 |
gggattggtcccc |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19145461 |
gggattggtcccc |
19145449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 459
Target Start/End: Complemental strand, 32059587 - 32059429
Alignment:
| Q |
304 |
aaggtctccggtttgaatcctcccggtgccaatttctgttggttt-gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtg |
402 |
Q |
| |
|
|||||||| |||| || |||| | |||||||||||| || || | ||||||||||||| ||||||| |||||||| | ||||| || ||||| | ||| |
|
|
| T |
32059587 |
aaggtctcaggttcgattccttctggtgccaatttcggtgggctaagtccatacagagc-ttgctctggctttaaacggggcccccgcaagtgggcggtg |
32059489 |
T |
|
| Q |
403 |
ggattggtccc--cggattagtcggt-attgggctgaataccgagttttcaaaataaaaa |
459 |
Q |
| |
|
||||||||||| ||||||||||||| |||| | ||||||||||||||||| ||||| |
|
|
| T |
32059488 |
ggattggtcccctcggattagtcggtccttggatcggataccgagttttcaaaaaaaaaa |
32059429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 31206338 - 31206444
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattgg--tccccggattagtcggt-attgggctgaataccgagt |
445 |
Q |
| |
|
||||||||||||| |||||| |||||||||| | ||| | ||||||| |||||||||| ||| ||||||||||||| |||||| | ||||||||| |
|
|
| T |
31206338 |
gtccatacagagctatgctcttgctttaaatgggacccccacaagtggacggtgggattggactcctcggattagtcggtccttgggccggataccgagt |
31206437 |
T |
|
| Q |
446 |
tttcaaa |
452 |
Q |
| |
|
||||||| |
|
|
| T |
31206438 |
tttcaaa |
31206444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 2499280 - 2499215
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtcccc |
414 |
Q |
| |
|
||||||| |||||||| |||| |||||||||| | |||||| ||||||| ||| ||||||||||| |
|
|
| T |
2499280 |
gtccatatagagccttactctggctttaaatgggacccttgaaagtggacggtgagattggtcccc |
2499215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 407
Target Start/End: Complemental strand, 18351794 - 18351690
Alignment:
| Q |
302 |
tcaaggtctccggtttgaatcctcccggtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagt |
401 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||| ||| || | || |||||||| | ||||||| | |||| || ||||||||| |||||| ||| |
|
|
| T |
18351794 |
tcaaggtctcaagtttgaatcttctcggtgccaatttatgtggggtagttcatacagaactttgctctgacattaattg-ggcccttgccagtggaaagt |
18351696 |
T |
|
| Q |
402 |
gggatt |
407 |
Q |
| |
|
|||||| |
|
|
| T |
18351695 |
gggatt |
18351690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0623 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0623
Description:
Target: scaffold0623; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 1157 - 1093
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtcccc |
414 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||||| || ||||||| ||||||||||||||| |
|
|
| T |
1157 |
gtccatacagagc-ttgctctggctttaaatggggcccccgcaagtggacggtgggattggtcccc |
1093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 9400 - 9336
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtcccc |
414 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||||| || ||||||| ||||||||||||||| |
|
|
| T |
9400 |
gtccatacagagc-ttgctctggctttaaatggggcccccgcaagtggacggtgggattggtcccc |
9336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 2103155 - 2103230
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc-cggattagtcg |
424 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||||| || ||||| | |||||||||||||| ||||||||||| |
|
|
| T |
2103155 |
gtccatacagagc-ttgctctggctttaaatggggcccccgcaagtgggcggtgggattggtccctcggattagtcg |
2103230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 23636687 - 23636607
Alignment:
| Q |
329 |
gtgccaatttctgttggtttgtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattgg |
409 |
Q |
| |
|
||||||||||| || |||| ||||||| ||||| ||||||| |||||||||| |||||| | ||| ||| |||||||||| |
|
|
| T |
23636687 |
gtgccaatttcggtgggttagtccatatagagctttgctctggctttaaatggggccctcacaagtagacggtgggattgg |
23636607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 41745 - 41669
Alignment:
| Q |
349 |
gtccatacagagccttgctctcgctttaaatgaggcccttgctagtggacagtgggattggtccc--cggattagtcg |
424 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||| ||| ||||| || ||||||||||||| ||||||||||| |
|
|
| T |
41745 |
gtccatacagagc-ttgctctggctttaaacggggcccctgcaagtgggcaatgggattggtcccctcggattagtcg |
41669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University