View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_11 (Length: 547)
Name: NF4381_high_11
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 200 - 547
Target Start/End: Complemental strand, 35084945 - 35084598
Alignment:
| Q |
200 |
tagttagaacatgtgtgaacgacatatcaaaggtctccttatcatactcacagattcgacgccataattccatgtccaaatgtatgttcgggttgttgta |
299 |
Q |
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| T |
35084945 |
tagttagaacatgtgtgaacgacatatcaaaggtctccttatcatactcacagatttgacgccataattccatgtcctaatgtatgttcgggttgttgtg |
35084846 |
T |
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| Q |
300 |
tgttgcaagtctatcctcatgcacaaccatgcatcagattccttgggatcacccacctccgaagattctggacgcaactgttccataacatctgaatgca |
399 |
Q |
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| T |
35084845 |
tgttgcaagtctatcctcatgcacaaccatgcatcagattccttgggatcacccacctccgacgattctggacgcaactgttccataacatctgaatgca |
35084746 |
T |
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| Q |
400 |
cgttaacgtgcgctactggggaaaccaattccaacacagggctagtcggatgaggcagtgtcccatgtggaatttcatcttacacaatctacaaagcaaa |
499 |
Q |
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||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35084745 |
cgttaacgtgctctaccggggaaaccaattccaacacggggctagtcagatgaggcagcgtcccatgtggaatttcatcttacacaatctacaaagcaaa |
35084646 |
T |
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| Q |
500 |
actgaaagagttggaggaaaatgtattattagttgcgacaacatgtgc |
547 |
Q |
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| T |
35084645 |
actgaaagagttggaggaaaatgcattattagttgcgacaacatgtgc |
35084598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 35090005 - 35089859
Alignment:
| Q |
58 |
ctgttgtgtccaagttaccaaaacctcgagaattccaataaaaaacaattatattgggcaataggagatgactcacccctgcaacgggttctgtacggcg |
157 |
Q |
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| T |
35090005 |
ctgttgtgtccaagttaccaaaacctcgggaattccaataaaaaacaattat--tgggcaataggagatgactcacccctgcagcgggttctgtacggcg |
35089908 |
T |
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| Q |
158 |
gcttcccaatccaaagtttctttaatttttgtttatgcttcttagttag |
206 |
Q |
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| T |
35089907 |
gcttcccaatccgaagtttctttaatttttgtttatgcttcttagttag |
35089859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 39528344 - 39528458
Alignment:
| Q |
215 |
tgaacgacatatcaaaggtctccttatcatactcacagattcgacgccataattccatgtccaaatgtatgttcgggttgttgtatgttgcaagtctatc |
314 |
Q |
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|||||| |||||||| ||||||||||||||||| || |||| ||| |||||||||||||| |||||||||| |||||| | |||||| |||||||| |
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| T |
39528344 |
tgaacggcatatcaacggtctccttatcatactaacggatttgacaccataattccatgttatgttgtatgttcgagttgttatgtgttgctagtctatc |
39528443 |
T |
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| Q |
315 |
ctcatgcacaaccat |
329 |
Q |
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| T |
39528444 |
ttcatgcacaaccat |
39528458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 18145314 - 18145370
Alignment:
| Q |
391 |
ctgaatgcacgttaacgtgcgctactggggaaaccaattccaacacagggctagtcg |
447 |
Q |
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| T |
18145314 |
ctgaatgcacgtcaatgtgcgctacttggggaatcaattccaacacaggactagtcg |
18145370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 36606188 - 36606112
Alignment:
| Q |
381 |
tccataacatctgaatgcacgttaacgtgcgctactggggaaaccaattccaacacagggctagtcggatgaggcag |
457 |
Q |
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| T |
36606188 |
tccacaacatttgaatgcacgtcatcgtgcactacttgggaaaccaaattcaacacagggatagtagggtgaggcag |
36606112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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