View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_12 (Length: 525)
Name: NF4381_high_12
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 5 - 508
Target Start/End: Original strand, 53956632 - 53957109
Alignment:
| Q |
5 |
aacacagaagctgatcccgtcacctgaattgagtttaattttgtatttccgtataatgatatgaaggcgaatatattttcttttttaaataagcaatgtt |
104 |
Q |
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| T |
53956632 |
aacacagaagctgatcccgtcacctgaattgagtttaattttgtatttccgtataatgatatgaaggcgaatatgttttcttttttaaataagcaatgtt |
53956731 |
T |
|
| Q |
105 |
agtaagtatgatttgttaactctttgtacatcatcttttgggagttttggcctaatcctcttctttgatctctttctttttatatatattttggggtggt |
204 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
53956732 |
agtaagtaagatttgttaactctttgtacatcatcttttgggagttttggcctaatcctctcctttgttctctttctttttatatatattttggggtggt |
53956831 |
T |
|
| Q |
205 |
ttaactctttgctaccaccatttggataaataaaaaagttggtattagattaatatttttctcctcaattcaaatttgaatccaagatctcaagctcaat |
304 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
53956832 |
ttaactctttgctaccacctttttgataaataaaaaagttggtattagattaatatttttctccttaatttaaatttgaatccaagatctcaagctcaat |
53956931 |
T |
|
| Q |
305 |
taatctttagttcaaaccagttgaactactcagccccattgaaggcaatatgttgttaacaatctaaatatctaagcaannnnnnnnnnnnnnnnatagt |
404 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53956932 |
taatctttagttcaaaccag-------------------tgaaggcaatatgttgttaacaatctaaatatctaagcaattttttattttattttatagt |
53957012 |
T |
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| Q |
405 |
attaaataaaagccccgaaatttgcttaaattttattggtttccttttcccttttccctttcttaccacctcccttatccaccccattccgttggtgcgg |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957013 |
attaaataaaagccccgaaatttgcttaaattttattggttt-------ccttttccctttcttaccacctcccttatccaccccattccgttggtgcgg |
53957105 |
T |
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