View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_high_15 (Length: 498)

Name: NF4381_high_15
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_high_15
NF4381_high_15
[»] chr2 (3 HSPs)
chr2 (243-482)||(17446153-17446392)
chr2 (49-243)||(17447630-17447825)
chr2 (96-129)||(17445437-17445470)
[»] chr6 (12 HSPs)
chr6 (67-243)||(28872915-28873091)
chr6 (62-243)||(33279087-33279262)
chr6 (62-239)||(33395223-33395400)
chr6 (49-219)||(33293130-33293300)
chr6 (49-243)||(33414724-33414918)
chr6 (49-243)||(33258352-33258546)
chr6 (300-482)||(33413829-33414027)
chr6 (1-113)||(31564920-31565032)
chr6 (402-471)||(31565456-31565525)
chr6 (402-479)||(33351046-33351123)
chr6 (139-243)||(33384180-33384284)
chr6 (287-352)||(31565572-31565637)
[»] scaffold0428 (2 HSPs)
scaffold0428 (62-243)||(14991-15166)
scaffold0428 (49-243)||(2473-2667)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 243 - 482
Target Start/End: Complemental strand, 17446392 - 17446153
Alignment:
Q  243 tgagtcagtcttcttttccttgttgcctaatatagacttcataaaactttattgcctcctttaagcttccacttcccagatatacgcataacttatagag 342  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17446392 tgagtcagtcttcttttgcttgttgcctaatatagacttcataaaactttattgcttcctttaagcttccacttcccagatatacgcataacttatagag 17446293  T
Q  343 caaatttcacgttaatcgaaatattcaactgtatcagtatactataagtaaagagtttgaatgattaatgattattatcatttacatgagaagtaacaaa 442  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17446292 caaatttcaagttattcgaaatattcaactatatcagtatactataagtaaagagtttgaatgattaatgattattatcatttacatgagaagtaacaaa 17446193  T
Q  443 tatcaagagttaatcaaacaaacaattcaaaccttaatga 482  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17446192 tatcaagagttaatcaaacaaacaattcaaaccttaatga 17446153  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 17447825 - 17447630
Alignment:
Q  49 gtcttccggatgacttgtcagcggatgagagaaac-tttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttac 147  Q
    |||||||||||  ||| |||||||||||||||  | ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  17447825 gtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttttcaagatcaccttcagtttcggcaagggctttcttac 17447726  T
Q  148 agtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17447725 agtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 17447630  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 17445470 - 17445437
Alignment:
Q  96 tatgcttgcgccttttcaagatcaccttcagttt 129  Q
    |||||||| |||||||||||||||||||||||||    
T  17445470 tatgcttgagccttttcaagatcaccttcagttt 17445437  T

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Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 28873091 - 28872915
Alignment:
Q  67 cagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttacagtccataatcccagcacc 166  Q
    |||| |||||||||  |||||  ||||||||||||| ||||||||||||||||||||| |||| || ||||||||||||||||||||| ||||  | |||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcctggaacc 28872992  T
Q  167 ggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 243  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  28872991 ggtttcttctcttaatcgtttaaccaatgaggccgaaaccactactgttgatttcttgcaacacaacattgaacaat 28872915  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 33279087 - 33279262
Alignment:
Q  62 cttgtcagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttacagtccataatccca 161  Q
    ||||||||| ||| |||||  |||||| || ||||||||||||||||||||| ||| ||||||||||| || |||||| || |||||||||||  |||||    
T  33279087 cttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattattacagtccatcgtccca 33279185  T
Q  162 gcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 243  Q
    |||||||||||||     ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33279186 gcaccggtttctt-----aattgtttaacgaatgaggccgaaaccactactgttgatttccaacaaaacaacattgaacaat 33279262  T

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Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 62 - 239
Target Start/End: Original strand, 33395223 - 33395400
Alignment:
Q  62 cttgtcagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttacagtccataatccca 161  Q
    ||||||||| |||||||||  |||| | || ||||||| ||| ||||||||||||||||||| ||||| ||  | |||||||||||||||||||||||||    
T  33395223 cttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttcaagatcacctttagtttcggctaaggctttcttacagtccataatccca 33395322  T
Q  162 gcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaa 239  Q
    ||||  |||||||  |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33395323 gcacttgtttcttgacttaattgttgaaataatgaggccgaaaccactactgttgatttcctacaaaacaatattgaa 33395400  T

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Target: chr6; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 33293130 - 33293300
Alignment:
Q  49 gtcttccggatgacttgtcagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttaca 148  Q
    |||||| ||||  ||| |||||| ||||||||  |||||| ||||||||||||| | ||||||||||||||||||| ||||  | | | |||||||||||    
T  33293130 gtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttcaagatcaccttctgtttcagcatgagctttcttaca 33293229  T
Q  149 gtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatt 219  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  33293230 gtccatcatcccagcaccggtttcttctcttaattgtttatccaatgagtctgaaaccactactgttgatt 33293300  T

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Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 33414724 - 33414918
Alignment:
Q  49 gtcttccggatgacttgtcagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttaca 148  Q
    |||||||||||  ||| |||||||||||||||  |||||| ||||| ||||||||||||||||||||||| ||||| ||||  | ||| |||||||||||    
T  33414724 gtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttaca 33414823  T
Q  149 gtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 243  Q
    |||||| ||||| ||||| |||||||||| || ||| || ||||| |||||||| || |||||| | |||||||||||| |||| ||||||||||    
T  33414824 gtccatcatccctgcaccagtttcttctcgtagttgcttgaccaaagaggccgagactactactttggatttcctacaacacaaaattgaacaat 33414918  T

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Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 33258352 - 33258546
Alignment:
Q  49 gtcttccggatgacttgtcagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttaca 148  Q
    |||| ||||||  ||| |||||||||||||||  ||||||  |||| |||||||||| |||||||||||||||||| |||| || | | |||||||||||    
T  33258352 gtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttaca 33258451  T
Q  149 gtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 243  Q
    |||||| ||||| ||||||||||||||||  | ||| ||||||||  |||| || |||| ||| ||||||||||| |||  ||||||||||||||    
T  33258452 gtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctgagaccagtaccgttgatttcctgcaacccaacattgaacaat 33258546  T

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Target: chr6; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 482
Target Start/End: Original strand, 33413829 - 33414027
Alignment:
Q  300 cctttaagcttccacttcccagatatacgcataacttatagagcaaatttcacgttaatcgaaatattcaactgtatcagtatactataagtaaagagtt 399  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||| |||| ||  || |||||||||||||||||  ||| |||||||||| |||||||     
T  33413829 cctttaagcttccacttcttagatatacgcataacttatcgagcatattttacaatattcgaaatattcaactgtgccagcatactataagcaaagagtg 33413928  T
Q  400 ----------------tgaatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaaccttaatga 482  Q
                    | |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  33413929 cctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaacaattcaaaccttaatga 33414027  T

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Target: chr6; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31565032 - 31564920
Alignment:
Q  1 taatgtgtgaatcgtgaatgtatatattgattcttccaacaacaaatcgtcttccggatgacttgtcagcggatgagagaaactttttactgaggtatgc 100  Q
    ||||| ||||||||||||||||| ||  |||||||||  || ||| |||||||||||||  |||||||||||||||||||  |||||| |||||||||||    
T  31565032 taatgcgtgaatcgtgaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgc 31564933  T
Q  101 ttgcgccttttca 113  Q
    |||||||||||||    
T  31564932 ttgcgccttttca 31564920  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 31565525 - 31565456
Alignment:
Q  402 aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattca 471  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||    
T  31565525 aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattca 31565456  T

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Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 33351046 - 33351123
Alignment:
Q  402 aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaaccttaa 479  Q
    |||||||||||||||||||| ||||||  || |||||||||| |||||| ||||| ||||||||||||||||||||||    
T  33351046 aatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaaccttaa 33351123  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 33384180 - 33384284
Alignment:
Q  139 ctttcttacagtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattga 238  Q
    |||||||||||||||| ||| | ||||| |||||||||   | ||| |||||||| ||||| || |||||||| ||||||||||| ||||||||||||||    
T  33384180 ctttcttacagtccatcatctctgcacctgtttcttcttgcagttgcttaaccaaagaggctgagaccactaccgttgatttcctgcaaaacaacattga 33384279  T
Q  239 acaat 243  Q
     ||||    
T  33384280 gcaat 33384284  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 31565637 - 31565572
Alignment:
Q  287 aactttattgcctcctttaagcttccacttcccagatatacgcataacttatagagcaaatttcac 352  Q
    |||||||| || |||||||||||| |||||   ||||||| ||||||||||||||| |||||||||    
T  31565637 aactttatcgcttcctttaagctttcactttttagatatatgcataacttatagagtaaatttcac 31565572  T

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Target: scaffold0428 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 15166 - 14991
Alignment:
Q  62 cttgtcagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttacagtccataatccca 161  Q
    ||||||||| ||| |||||  |||||| || ||||||||||||||||||||| ||| ||||||||||| || |||||| || |||||||||||  |||||    
T  15166 cttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattattacagtccatcgtccca 15068  T
Q  162 gcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 243  Q
    |||||||||||||     ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15067 gcaccggtttctt-----aattgtttaacgaatgaggccgaaaccactactgttgatttccaacaaaacaacattgaacaat 14991  T

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Target: scaffold0428; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 2473 - 2667
Alignment:
Q  49 gtcttccggatgacttgtcagcggatgagagaaactttttactgaggtatgcttgcgccttttcaagatcaccttcagttttggaaagggctttcttaca 148  Q
    |||| ||||||  ||| |||||||||||||||  ||||||  |||| |||||||||| |||||||||||||||||| |||| || | | |||||||||||    
T  2473 gtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttaca 2572  T
Q  149 gtccataatcccagcaccggtttcttctcttaattgtttaaccaatgaggccgaaaccactactgttgatttcctacaaaacaacattgaacaat 243  Q
    |||||| ||||| ||||||||||||||||  | ||| ||||||||  |||| || |||| ||| ||||||||||| |||  ||||||||||||||    
T  2573 gtccatcatccctgcaccggtttcttctcgcagttgcttaaccaaaaaggctgagaccagtaccgttgatttcctgcaacccaacattgaacaat 2667  T

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