View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4381_high_2 (Length: 712)
Name: NF4381_high_2
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 698
Target Start/End: Complemental strand, 28813125 - 28812451
Alignment:
| Q |
18 |
cagatagttcaaaaatatctgaactccaagaagctaatagagaagttggaagggacctgttaaggcttcttcattttgtggaaatgaatgctactggttt |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28813125 |
cagatagttcaaagatatctgaactccaagaagctaatagagaagttggaagagacctgttaaggcttcttcattttgtggaaatgaatgctactggttt |
28813026 |
T |
|
| Q |
118 |
gagaaagatcttgaagaagtttgataagcggttcggctataaattcaccgactattacgtcaagacacgcgcaaatcatccttattctcagctcagacag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28813025 |
gagaaagatcttgaagaagtttgataagcggttcggctataaattcaccgactattatgtcaagacacgcgcaaatcatccttattctcagctcagacag |
28812926 |
T |
|
| Q |
218 |
gttctaaggcacgtggtaatgtttctaaccctgactatatcatgcttaatgttacaaaatataaggtagtatttttgtattagaatccttttatgtgatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28812925 |
gttctaaggcacgtggtaatgtttctaaccctgactatatcatgcttaatgttacaaaatataaggtagtatttttgtattagaatccttttatgcgatc |
28812826 |
T |
|
| Q |
318 |
tttgtatgtttgaaacagtatcatcatgtagtagtttctttgcagggaattggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatt |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28812825 |
tttgtatgttcgaaacagtatcatcatgtagtagtttctttgcagggaattggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatt |
28812726 |
T |
|
| Q |
418 |
tacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctcatcaagttagttcttgatccattgtttacatgatacttttaacctt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
28812725 |
tacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctcatcaagttagttcttgacc---------------------aacctt |
28812647 |
T |
|
| Q |
518 |
tactagctttctagtcgttcttgtgtttgatctaatactaatttgagggagataaaagagtagcatagaagatattaacatacaaacataattaatatca |
617 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28812646 |
tactagttttctagtcgttcttgtgtttgatctaatactaatttgagggagataaaagagtagcatagaagatattaacatacaaacataattaatatca |
28812547 |
T |
|
| Q |
618 |
ttaacaacaattgcataattggagtttagcttttat---------------tttactcgtacgcaaaatctaaggtattcttccaacttttgatga |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28812546 |
ttaacaacaattgcataattggagtttagctttaattttttgtacttttggtttactcatacgcaaaatctaaggtattcttccaacttttgatga |
28812451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 298 - 525
Target Start/End: Original strand, 33490943 - 33491170
Alignment:
| Q |
298 |
tagaatccttttatgtgatctttgtatgtttgaaacagtatcatcatgtagtagtttctttgcagggaattggtgctgttgtgggagtcttgtctcataa |
397 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||| |||||| |||||| || ||||||| |||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
33490943 |
tagattccttttatgtaatctttgctcgtttgaaactgtatcagcatgtaataatttctttacaggaatttggtgctgttgtgggagtcttgtctcataa |
33491042 |
T |
|
| Q |
398 |
tcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctcatcaagttagttcttgatccattgtt |
497 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33491043 |
tcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataatcaaccttcttatgctcatcaagttagttcttgatccattatt |
33491142 |
T |
|
| Q |
498 |
tacatgatacttttaacctttactagct |
525 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
33491143 |
tacatgatacttttaatctttactagct |
33491170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 374 - 564
Target Start/End: Original strand, 33419821 - 33420011
Alignment:
| Q |
374 |
tgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctcat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33419821 |
tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctcat |
33419920 |
T |
|
| Q |
474 |
caagttagttcttgatccattgtttacatgatacttttaacctttactagctttctagtcgttcttgtgtttgatctaatactaatttgag |
564 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
33419921 |
caagttagttcttgatccattatttacatgatacttttaatctttactagctctctaatcattcttgtgtttgatctaatgctaatttgag |
33420011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 33419602 - 33419761
Alignment:
| Q |
107 |
gctactggtttgagaaagatcttgaagaagtttgataagcggttcggctataaattcaccgactattacgtcaagacacgcgcaaatcatccttattctc |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||| ||| |||| |
|
|
| T |
33419602 |
gctactggtttgagaaagatgttgaagaagtttgataagcggttcggctatacattcaccgactatcatgtcaagacacacgcaaatcatctttactctc |
33419701 |
T |
|
| Q |
207 |
agctcagacaggttctaaggcacgtggtaatgtttctaaccctgactatatcatgcttaatgttacaa |
274 |
Q |
| |
|
| | ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33419702 |
atgtaagacaggtt--------tgtgataatgtttctaaccctgactatatcatgtttaatgttacaa |
33419761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 428 - 566
Target Start/End: Original strand, 33412742 - 33412875
Alignment:
| Q |
428 |
tcaaggaagctacatttctatatatgaccaaccttcttatgctcatcaagttagttcttgatccattgtttacatgatacttttaacctttactagcttt |
527 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||| | |
|
|
| T |
33412742 |
tcaaggaagctacatttctatatataacca---ttcttatgctcatcaagttagttcttgatcaattgttggcatgata-ttttaatctttactagctct |
33412837 |
T |
|
| Q |
528 |
ctagtcgttcttgtgtttgatctaatactaatttgaggg |
566 |
Q |
| |
|
||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
33412838 |
ctaacccttcttg-atttgatctaatactaatttgaggg |
33412875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 33419765 - 33419823
Alignment:
| Q |
264 |
taatgttacaaaatataaggtagtatttttgtattagaatccttttatgtgatctttgt |
322 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
33419765 |
taatgttacaaaatataagataatatttttgtaatagattccttttatgtaatctttgt |
33419823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 33412710 - 33412744
Alignment:
| Q |
360 |
cagggaattggtgctgttgtgggagtcttgtctca |
394 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33412710 |
cagggaattggagctgttgtgggagtcttgtctca |
33412744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 19260354 - 19260442
Alignment:
| Q |
122 |
aagatcttgaagaagtttgataagcggttcggctataaattcaccgactattacgtcaagacacgcgcaaatcatccttattctcagct |
210 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||| |||||| || || || ||||| || || ||||||||||||||||||||||| |
|
|
| T |
19260354 |
aagatattgaagaagtttgataagcgctttggttatagattcactgattactatgtcaaaactcgtgcaaatcatccttattctcagct |
19260442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 44983806 - 44983686
Alignment:
| Q |
90 |
attttgtggaaatgaatgctactggtttgagaaagatcttgaagaagtttgataagcggttcggctataaattcaccgactattacgtcaagacacgcgc |
189 |
Q |
| |
|
||||||| || || |||||| ||||||| |||| ||||||||||||||||| || || || ||||||| ||| || || || ||||| || || || || |
|
|
| T |
44983806 |
attttgtagagataaatgctgttggtttgcgaaaaatcttgaagaagtttgacaaacgctttggctatagatttactgattactacgttaaaactcgtgc |
44983707 |
T |
|
| Q |
190 |
aaatcatccttattctcagct |
210 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
44983706 |
gaatcatccttattcccagct |
44983686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University