View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_20 (Length: 451)
Name: NF4381_high_20
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 7499728 - 7499313
Alignment:
| Q |
19 |
atcacgagggcacatcttacctcctacaacatactattaacgattataaaatattcgagacctctatgtattttctttctagtgagaggtctaagaacat |
118 |
Q |
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| T |
7499728 |
atcacgagggcacatcttacctcctacaacatactattaacgattataaaatattggagacctctatgtattttctttctagtgagaggtctaagaacat |
7499629 |
T |
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| Q |
119 |
ggtcaaattagattacttaccttcatttcaaaaggataaccaatatattgagattttgagttctcgtagtatcaatggtattctttgtatcagtattttc |
218 |
Q |
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| T |
7499628 |
gatcaaattagattacttaccttcatttcaaaaagataaccaatatattgagattttgagttctcgtagtatcaatggtattctttgtatcagtattttc |
7499529 |
T |
|
| Q |
219 |
cattttgatgaggaaagacttgcattgtggaatccagccactgaagaattcaagatcattcctcctagcaatttttagtgtgtaccttatcggaattttg |
318 |
Q |
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| T |
7499528 |
cgttttgatgaggaaagacttgcattgtggaatccagccactgaagaattcaagatcattcctcctagcaattttgagtgtgtaccttatcgggattttg |
7499429 |
T |
|
| Q |
319 |
aaccgcttaatcatggattcgtttatgaccatgttaggaatgactataaggtgattcgacgtgcaacatttgattatctaacatacgatgatcgtataag |
418 |
Q |
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| T |
7499428 |
aaccgcttaatcatggattcggttatgaccatgttaggaatgactataaggtgattcgtcgtgcaacatttgattatctaacatactatgattgtataag |
7499329 |
T |
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| Q |
419 |
acttgatttgaaattt |
434 |
Q |
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| T |
7499328 |
acttggtttgtaattt |
7499313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 310 - 434
Target Start/End: Complemental strand, 7489297 - 7489173
Alignment:
| Q |
310 |
ggaattttgaaccgcttaatcatggattcgtttatgaccatgttaggaatgactataaggtgattcgacgtgcaacatttgattatctaacatacgatga |
409 |
Q |
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|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||| |
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| T |
7489297 |
ggaagtttggaccgcttaatcatggattcggttatgaccatgttaggaatgactataaggtgattcggcgtgcaacatttgatgagctaacatactatga |
7489198 |
T |
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| Q |
410 |
tcgtataagacttgatttgaaattt |
434 |
Q |
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| T |
7489197 |
ttgtataagacttggtttggaattt |
7489173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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