View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_23 (Length: 410)
Name: NF4381_high_23
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 33008824 - 33009222
Alignment:
| Q |
11 |
catcatcatcaaatgagaagaaaaacaccaacaccaatggggtaattatcaaagtgtacgtggaatctcctaaaactcgttccatgaagaaaacaaagcc |
110 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33008824 |
catcatcatcaaatgagaagaaaaacacgcacaccaatggggtaattatcaaagtgtacgtggaatctcctaaaactcgttccatgaagaaaacaaagcc |
33008923 |
T |
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| Q |
111 |
acgtgaaaatcttacaaatgcagaaacgcagggatatgaacatgatcgtcgtgctttgcttcttgctcattctcgatctcttagaaaatcatcatctgaa |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33008924 |
acgtgaaaatcttataaatgcagaaacgcagggatatgaacatgatcgtcgtgctttgcttcttgctcattctcgatctcttagaaaatcagcatctgaa |
33009023 |
T |
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| Q |
211 |
aagaaggttccattgcccattgttcaatcaaattcaagacctaaaattaaaaaggtaaactctcttctcttttttcttgtcctaaaatttgatgtgagat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33009024 |
aagaaggttccattgcccattgttcaatcaaattcaagacctaaaattaaaaaggtaaactctcttgtcttttttcttgtcctaaaatttgatgtgagat |
33009123 |
T |
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| Q |
311 |
tatcaacatatgttataggatgacnnnnnnnnnttgtatatactagtgccggtacccgtaaattaatcgtatagaaatgaatgtaactttctgacaaacc |
410 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33009124 |
tatcaacatatactataggatgac-aaaaaaaattgtatatactagtgccggtacccgtaaattaatcgtatagaaatgaatgtaactttctgacaaacc |
33009222 |
T |
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