View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_3 (Length: 673)
Name: NF4381_high_3
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 20 - 552
Target Start/End: Complemental strand, 47287625 - 47287093
Alignment:
| Q |
20 |
ataggctcctttgaattacacacaaaatactgcatgatcaatctgaaattaaacttggcataaaagatgccacaaatttaaaaggcaaacgtgtcatact |
119 |
Q |
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| T |
47287625 |
ataggctcctttgaattacacacaaaatactgcatgatcaatctgaaattaaacttggcatgaaagatgccacaaatttaaaaggcaaacgtgtcatact |
47287526 |
T |
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| Q |
120 |
gctaccaaagaactataccatatgatactccaattatagtaattagtaactgtatcatgagtccattgctcagtctttcatgaacatatattcaagattt |
219 |
Q |
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| T |
47287525 |
gctaccaaagaactatacgatatgatactccaattatagtaattagtaactgtatcatgagtccattgctcagtctttcatgaacatgtattcaagattt |
47287426 |
T |
|
| Q |
220 |
gtcgcatattagtaggaatcatacttcttggccttaaactacattccttcaaaatcgcccctttagttgccgaatccatcactcctttcaaagacactta |
319 |
Q |
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| T |
47287425 |
gtcgcatattagtaggaatcatacttcttggccttaaactacattccttcaaaattgcccctttagttgccgaatccatcactcctttcaaagacactta |
47287326 |
T |
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| Q |
320 |
ccaccaattccacatgcatgtatatatatatctcatgtagtattttatcattcaaatcaatatatatttcattaatttcgtacactaaacaaacccaaat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47287325 |
ccaccaattccacatgcatgtatatatatatctcatgtagtatttaatcattcaaatcaatatatatttcattaatttcgtacactaaacaaacccaaat |
47287226 |
T |
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| Q |
420 |
cccaccaacactttactagtaaaatattaatctaactactagctactcaattccaacactctacctccttttctcttctaacccacccaaaatgagctct |
519 |
Q |
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| T |
47287225 |
cccaccaacactttactagtaaaatattaatccaactactagctactcaattccaacactctacctccttttctcttctaacccacccaaaatgagctct |
47287126 |
T |
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| Q |
520 |
atcacattaatcttaattttcttcatactatct |
552 |
Q |
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| T |
47287125 |
atcacattaatcctaattttcttcatactatct |
47287093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 673
Target Start/End: Complemental strand, 47287005 - 47286969
Alignment:
| Q |
637 |
ccctctagcaatcaaggagaatgggaactaatacaac |
673 |
Q |
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| T |
47287005 |
ccctctagcaatcaaggagaatgggaactaatacaac |
47286969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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