View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_32 (Length: 365)
Name: NF4381_high_32
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 1452046 - 1452340
Alignment:
| Q |
18 |
catatgtctaataaatgaaaatcaaattgtgtttcttaccactagaattctagtaatattgctggcaccaaagaccttatgnnnnnnntggtgctagcac |
117 |
Q |
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| T |
1452046 |
catatgtctaataagtgaaaatcaaattgtgtttcttaccactagaattctagtaatattgctggcaccaaagaccttatgaaaaaaatggtgctagcac |
1452145 |
T |
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| Q |
118 |
acaatatatgttggaaatgttcagattcttgtaaatctgttcaaatatttataggggaccaaannnnnnncatttaaatggcaacaaattgagtaatgat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1452146 |
acaatatatgttggaaatgttcagattcttgtaaatctgttcaaatatttataggggaccaaatttttttcatttaaatggcaacaaattgagtaatgat |
1452245 |
T |
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| Q |
218 |
ttttcatattttttaaatctggttctattaatcgaatgtaacggctaattaatatacatgtatatagttcaattttattccactaagaaagatac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1452246 |
ttttcatattttttaaatctggttctattaatcgaatgtaacggctaattaatatacatgtatatagttcaattttattccactaagaaagatac |
1452340 |
T |
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