View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_33 (Length: 364)
Name: NF4381_high_33
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 95 - 348
Target Start/End: Complemental strand, 14003833 - 14003584
Alignment:
| Q |
95 |
tttattgccttcacctaaaaataagtttgagaatactagttacacacaagttgcaagaatgatctttcaaaatcattaatttctgattaatattttgtac |
194 |
Q |
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| T |
14003833 |
tttattgccttcacctaaaaataagtttgagaatactagt-acacacaagttgcaagaatgatctttcaaaatcattaatttctgattaatattttgtac |
14003735 |
T |
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| Q |
195 |
atgtattggttataagtcatcaattatttattacttgacgtgttgatttctctgaagaccggagagtttttaagtcnnnnnnnngttgtagtatttgaat |
294 |
Q |
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| T |
14003734 |
atgtagtggttataagtcatcaattatttattacttgacgtgttgatttctctgaagaccggagagttttcaagtc---tatttgttgtagtatttgaat |
14003638 |
T |
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| Q |
295 |
tttctaactgtctttgttttcatcctgacatcattttgaaaaatttcaccacag |
348 |
Q |
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| T |
14003637 |
tttctaactgtctttgttttcatcctgacatcattttgaaaaatttcacaacag |
14003584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 13871098 - 13871243
Alignment:
| Q |
98 |
attgccttcacctaaaaataagtt--tgagaatactagttacacacaagttgcaagaatgatctttcaaaatcattaatttctgattaatattttgtaca |
195 |
Q |
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| T |
13871098 |
attgccttcacctgagaataagttaatgtgaatactact-acacacaagtttcatgaataatctttcaaaattattaatttctgattaatcttttctaca |
13871196 |
T |
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| Q |
196 |
tgtattggttataagtcatcaattatttattacttgacgtgttgatt |
242 |
Q |
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| T |
13871197 |
tgtagtggttataagtcatcgattatttattacttgacgtgttgatt |
13871243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 14002397 - 14002344
Alignment:
| Q |
217 |
attatttattacttgacgtgttgatttctctgaagaccggagagtttttaagtc |
270 |
Q |
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| T |
14002397 |
attatttattatttgacgtgttaattgctctgaagaccggagaattttcaagtc |
14002344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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