View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_34 (Length: 332)
Name: NF4381_high_34
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_34 |
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| [»] scaffold0011 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 242382 - 242688
Alignment:
| Q |
19 |
agccacgaggttggttttaattcaaatccttttgaactcgaaagggattaagttgaatcctattacctcgctttactacattgctccttgttgtttggnn |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242382 |
agccacgaggttggttttaattcaaattcttttgaactcgaaagggattaagttgaatcctattacctcgctttactacattgctccttgttgtttggtt |
242481 |
T |
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| Q |
119 |
nnnnngtcgtttccttggttcgttatggagtatcctttgttgagggataaagcaagtttgagttttgatttttgggttttcggaagcaattcgttgtgtg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
242482 |
tttttgtcgtttccttggttcgttatggagtatcctttgttgagggataaagcaagtttgagttttgatttttgggttttcggaagtaattcgttgtgtg |
242581 |
T |
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| Q |
219 |
cttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggttgcttattgcatt |
318 |
Q |
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| T |
242582 |
cttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggttgcttattgcatt |
242681 |
T |
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| Q |
319 |
ttcttgg |
325 |
Q |
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||||||| |
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| T |
242682 |
ttcttgg |
242688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 152 - 40
Alignment:
| Q |
206 |
aattcgttgtgtgcttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggt |
305 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
152 |
aattcgctgtgtgcttttgctttgaatcttgctgtgtttttgttggttgggaagacgtcggctttgactatgaatgttgctggggttgttaaggattggt |
53 |
T |
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| Q |
306 |
tgcttattgcatt |
318 |
Q |
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| T |
52 |
tgttgattgcatt |
40 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 47014013 - 47013901
Alignment:
| Q |
206 |
aattcgttgtgtgcttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattggt |
305 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
47014013 |
aattcgctgtgtgcttttgctttgaatcttgctgtgtttttgttggttgggaagacgtcggctttgactatgaatgttgctggggttgttaaggattggt |
47013914 |
T |
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| Q |
306 |
tgcttattgcatt |
318 |
Q |
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|| | |||||||| |
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| T |
47013913 |
tgttgattgcatt |
47013901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 49575274 - 49575372
Alignment:
| Q |
206 |
aattcgttgtgtgcttttgctttgaaccttgctgtgtttttgcttgttgggaagacttcggctttgacgatgaatgttgctggtgttgtgaaggattgg |
304 |
Q |
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||||| |||||||| ||||||||||| |||||||| ||| | ||||||||||| || || |||||||| |||||||||||||||||||| || |||||| |
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| T |
49575274 |
aattctttgtgtgcatttgctttgaatcttgctgtttttcttcttgttgggaaaacatctgctttgacaatgaatgttgctggtgttgttaaagattgg |
49575372 |
T |
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