View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4381_high_39 (Length: 309)
Name: NF4381_high_39
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 52766586 - 52766870
Alignment:
| Q |
17 |
aagattagccacaaaatccaagtaagtttattagtattaggaaagagaaaacttgtgtggaaattgaactgggccgcttgaagatttgcagacatatgca |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
52766586 |
aagattagacacaaaatccaagtaagtttattagtattaggaaagagaaaacttttgtggaatttgaactgggccacttgaagatttgcagacat----- |
52766680 |
T |
|
| Q |
117 |
tgcaatcgaaagcaatcagtgcccaaaaaatcactttgcctctcataaatcaaaattcatagaaaaacaagaacaaattcctagtactaataggactgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52766681 |
-gcaatcgaaagcaatcagtgcccaaaaaatcactttgcctctcataaatcaaaattcatagaaaaacaagaacaa-ttcctagtactaataggactgat |
52766778 |
T |
|
| Q |
217 |
ttccacgttcaagaagggttttagtgcgaggattcttaccccaagctctctccctccacaacaactccacttcatcaaatgtcaaccctttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52766779 |
ttccacgttcaagaagggttttagtgcgaggattcttaccccaagctctctccctccacaacaactccacttcatcaaatgtcaaccctttg |
52766870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 207 - 306
Target Start/End: Original strand, 46135566 - 46135665
Alignment:
| Q |
207 |
taggactgatttccacgttcaagaagggttttagtgcgaggattcttaccccaagctctctccctccacaacaactccacttcatcaaatgtcaaccctt |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46135566 |
taggattgatttccacgttcaagaagggttttaatgtgaggataagtaccctaagctctctcccttcacaacaactccacttcatcaaatgtcaaccctt |
46135665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University