View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_42 (Length: 294)
Name: NF4381_high_42
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 25516151 - 25516410
Alignment:
| Q |
18 |
ttgtgttctccatgcattggcaataataa-------ggcaatcacttcccacaaattctattatttcttctttcagctgtattcctttggacatgataaa |
110 |
Q |
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|||||||||||||||||| |||||||||| ||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||| |
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| T |
25516151 |
ttgtgttctccatgcattagcaataataaaatatttggcaaccacttcccacaaattctaatttttcttctttcagctgtattactttggacataataaa |
25516250 |
T |
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| Q |
111 |
ataaataatataacccaattatacacggtttatttataggtacaggtagtatttttattgcagggtacaagacacatgtagttgttttttgtcttttctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25516251 |
ataaataatataacccaattatacacggtttatttataggtacaggtagtatttttattgcagggtacaagacacatgtagttgttttttgtcttttctt |
25516350 |
T |
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| Q |
211 |
ctagccaaatataaaatatgaaatggttttaaattggaagtcaatgccattataaaagtgg |
271 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25516351 |
ctagccaaatataaaatatg-aatggttttaaattggaagtcaatgccattataaaagtgg |
25516410 |
T |
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