View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_high_47 (Length: 284)

Name: NF4381_high_47
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_high_47
NF4381_high_47
[»] chr2 (1 HSPs)
chr2 (17-65)||(26443027-26443075)
[»] chr8 (2 HSPs)
chr8 (17-69)||(22783719-22783770)
chr8 (17-66)||(14837968-14838016)
[»] chr4 (1 HSPs)
chr4 (17-69)||(6221931-6221982)
[»] chr7 (2 HSPs)
chr7 (17-66)||(27963674-27963722)
chr7 (30-65)||(39274554-39274589)
[»] chr3 (1 HSPs)
chr3 (236-274)||(21037527-21037565)


Alignment Details
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 26443075 - 26443027
Alignment:
Q  17 aacattaaccaactatatttttagatgatttgatattcccttaaaaata 65  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26443075 aacattaaccaactatatttttagatgatttgacattcccttaaaaata 26443027  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 22783770 - 22783719
Alignment:
Q  17 aacattaaccaactatatttttagatgatttgatattcccttaaaaatagcag 69  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  22783770 aacattaaccaactatatttttagatga-ttgacattcccttaaaaatagcag 22783719  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 14837968 - 14838016
Alignment:
Q  17 aacattaaccaactatatttttagatgatttgatattcccttaaaaatag 66  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  14837968 aacattaaccaactatatttttagatga-ttgacattcccttaaaaatag 14838016  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 6221982 - 6221931
Alignment:
Q  17 aacattaaccaactatatttttagatgatttgatattcccttaaaaatagcag 69  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  6221982 aacattaaccaactatatttttagatga-ttgacattcccttaaaaatagcag 6221931  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27963722 - 27963674
Alignment:
Q  17 aacattaaccaactatatttttagatgatttgatattcccttaaaaatag 66  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  27963722 aacattaaccaactatatttttagatga-ttgacattcccttaaaaatag 27963674  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 39274589 - 39274554
Alignment:
Q  30 tatatttttagatgatttgatattcccttaaaaata 65  Q
    |||||||||||||||||||| |||||||||||||||    
T  39274589 tatatttttagatgatttgacattcccttaaaaata 39274554  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 21037565 - 21037527
Alignment:
Q  236 ttgccccagtagtactgtagctaataggcctgatgatgt 274  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  21037565 ttgccccagtagtactgttgctaataggcctgatgatgt 21037527  T

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