View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_5 (Length: 668)
Name: NF4381_high_5
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Complemental strand, 4776054 - 4775412
Alignment:
| Q |
1 |
acaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacaggaaa----caggtgcttatttaatttatattg |
96 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
4776054 |
acaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggtgcttatttaatttattttg |
4775955 |
T |
|
| Q |
97 |
gccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaatt |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775954 |
gccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaatt |
4775855 |
T |
|
| Q |
197 |
aatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |
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| T |
4775854 |
aatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattggagctacatatctatgtgcaaaccct |
4775755 |
T |
|
| Q |
297 |
gtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaa |
396 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775754 |
gtctttca---ctctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaa |
4775658 |
T |
|
| Q |
397 |
gtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgag |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775657 |
gtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgag |
4775558 |
T |
|
| Q |
497 |
ggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaa |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775557 |
ggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccat------------- |
4775471 |
T |
|
| Q |
597 |
ttagtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatat |
657 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775470 |
--agtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatat |
4775412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 576
Target Start/End: Complemental strand, 43061400 - 43060836
Alignment:
| Q |
16 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
112 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaa |
211 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
|
| Q |
212 |
cttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactct |
311 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||| ||||||||| |||||||||||||||||| |||| ||| | |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttc---actat |
43061104 |
T |
|
| Q |
312 |
aggatgaagcatattgccatagattatcattttgttcgcgatctcgt---tgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccag |
408 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
43061103 |
aggatgaaacacattgccatagattatcattttgtttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctac |
43061004 |
T |
|
| Q |
409 |
tcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtagg |
508 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
43061003 |
ccgatcttctcacaaagccgttatcctcggtacgacatcacttccttaaagacaagattggagttattgatgatacctccatcttgagcgggcgtgtagg |
43060904 |
T |
|
| Q |
509 |
agtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcat |
576 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||||||| ||||| ||||||||||||||| |
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|
| T |
43060903 |
agtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcagtaaatggaaatcat |
43060836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 503 - 657
Target Start/End: Complemental strand, 448677 - 448520
Alignment:
| Q |
503 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
599 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
|
| Q |
600 |
gtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatat |
657 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |
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|
| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatat |
448520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
264 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
304 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 521
Target Start/End: Complemental strand, 42019520 - 42019449
Alignment:
| Q |
450 |
ttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaa |
521 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||| | || |||||| || ||||||||| |||||| |
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|
| T |
42019520 |
ttccttaaagacaagattggagttcttgaagataactccattttcagggggagtaaaggagtatttacttaa |
42019449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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