View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4381_high_51 (Length: 280)
Name: NF4381_high_51
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 6256204 - 6255953
Alignment:
| Q |
18 |
ctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaaccgcaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6256204 |
ctaccttaacataacagaaaccaaaatagcaataaaagctatccagaagcaacttcaaaacacgctagcaagcctcccaaacacaacaccaaaccgcaac |
6256105 |
T |
|
| Q |
118 |
tgcagtggcatcacagaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctatt---ttttcttattcttcaagttcttat |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
6256104 |
tgcagtggcatcactgaaaaactgcaactctgcataggactgttgtcaaacacagtagcacataaaatctatttttttttcttattcttcaagttcgtat |
6256005 |
T |
|
| Q |
215 |
tctctgtttgttgtctgacatatacatttccttgagaagcatccatgtttga |
266 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6256004 |
tctctgtttgttgtctgacatataaatttccttgagaagcatccatgtttga |
6255953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 33 - 266
Target Start/End: Original strand, 43430057 - 43430290
Alignment:
| Q |
33 |
agaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaaccgcaactgcagtggcatcaca |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
43430057 |
agaaaccaaaatagcaataaaagccagccagaagcaactccgaaacacgctagcaagcctcccaaacacaacaccaaatcacaactgcagtggcatcacg |
43430156 |
T |
|
| Q |
133 |
gaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43430157 |
gaaaaactgcaactctgcacaggactgctgtcaaacacagcagcacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctag |
43430256 |
T |
|
| Q |
233 |
catatacatttccttgagaagcatccatgtttga |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |
|
|
| T |
43430257 |
catataaatttccttgagaagcatccatgcttga |
43430290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 51207629 - 51207875
Alignment:
| Q |
18 |
ctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaaccgcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51207629 |
ctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagagggcctcccaaacacaacaccaaaccgcaac |
51207728 |
T |
|
| Q |
118 |
tgcagtggcatcacagaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctattttttcttattcttcaagttcttattct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51207729 |
tgcagtggcatcacagaaaaactgcaactttgcacaggactgctgttaaacacaacaacacataaaatctattttttcttattcttcaagttcttattct |
51207828 |
T |
|
| Q |
218 |
ctgtttgttgtctgacatatacatttccttgagaagcatccatgtttga |
266 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
51207829 |
ctgtttgt--tctagcatataaatttccttgagaagcatccatgcttga |
51207875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University