View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_56 (Length: 268)
Name: NF4381_high_56
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 26325757 - 26326001
Alignment:
| Q |
15 |
agaaattatgatccattcaattacaatttaatatcaccagaaaatgactatggtattcagcaagggcaggatggtaataatgatctattttcccatgcaa |
114 |
Q |
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| T |
26325757 |
agaaattatgatccattcaattacaatttaatatcaccagaaaatgactatggtattcaacaagggcaggatggtaataatgatctattttcccatgcaa |
26325856 |
T |
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| Q |
115 |
tgtcacaacaaaatcatcctggtattcaacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataa |
214 |
Q |
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| T |
26325857 |
tgtcacaacaaaatcatcctggtattcaacatggacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataa |
26325956 |
T |
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| Q |
215 |
taatgtttcatttggaatgaataactttgaagcgggtagttcatc |
259 |
Q |
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| T |
26325957 |
taatgtttcatttggaatgaataactttgaagcgggtagttcatc |
26326001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 26325685 - 26325728
Alignment:
| Q |
18 |
aattatgatccattcaattacaatttaatatcaccagaaaatga |
61 |
Q |
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| T |
26325685 |
aattatgatccattcaattacaatttagtatcacaagaaaatga |
26325728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 48320120 - 48320064
Alignment:
| Q |
141 |
caacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaa |
197 |
Q |
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| T |
48320120 |
caacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaa |
48320064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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