View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_62 (Length: 246)
Name: NF4381_high_62
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_62 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 50421849 - 50422064
Alignment:
| Q |
11 |
gaatatcgaataccttgaatcttctgatgatgnnnnnnnttcattcataaattaagtacacattgatataaaaaatcaattatccaagcgaaaagtgtga |
110 |
Q |
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| T |
50421849 |
gaatatcgaataccttgaatcttctgatgatgaaaaaaattcattcagaaattaagtacacagtgatataaaaaatcaattatccaagcgaaaagtgtga |
50421948 |
T |
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| Q |
111 |
agttgtcagaaagtatggtagaaaactagaagttaaaagtaaactttgcaacatgcatgctatgctacttataaaaatagatgcatactcaagcaaatta |
210 |
Q |
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| T |
50421949 |
agttgtcagaaagtatggtagaaaactagaagctaaaagtaaactttgcaa----catgctatgctacttataaaaatagatgcatactcaagcaaatta |
50422044 |
T |
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| Q |
211 |
gctcttgttgaggagccaag |
230 |
Q |
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|||||||||||||||||||| |
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| T |
50422045 |
gctcttgttgaggagccaag |
50422064 |
T |
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