View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_66 (Length: 237)
Name: NF4381_high_66
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_66 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 45536609 - 45536473
Alignment:
| Q |
92 |
ggtgattaatgtttaagaattgcagataattcttcatacactcccgtgcaagtctgatcgctttttctaatgtgcttacagtaattaaccacatatttgt |
191 |
Q |
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| T |
45536609 |
ggtgattaatgtttaagaattgcagataattcttcataaactcccgtgcaagtctgatcactttttctaatgcgcttacagtaattaaccacatatttgt |
45536510 |
T |
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| Q |
192 |
atgt------aaaacataactacttcacaataattct |
222 |
Q |
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| T |
45536509 |
atgtaaaaaaaaaacataactacttcacagtaattct |
45536473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 44337315 - 44337385
Alignment:
| Q |
150 |
cgctttttctaatgtgcttacagtaattaaccacatatttgtatgtaaaacataactacttcacaataatt |
220 |
Q |
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| T |
44337315 |
cgctttttctattgcgcatacaataattaaccacatatttgtttataatgcataactacttcacaataatt |
44337385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 42919932 - 42920002
Alignment:
| Q |
150 |
cgctttttctaatgtgcttacagtaattaaccacatatttgtatgtaaaacataactacttcacaataatt |
220 |
Q |
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| T |
42919932 |
cgctttttctactgcgcttatagtaattaaccacatatttgtacttaatacataactacttcacaaaaatt |
42920002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 42920425 - 42920471
Alignment:
| Q |
174 |
aattaaccacatatttgtatgtaaaacataactacttcacaataatt |
220 |
Q |
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| T |
42920425 |
aattaaccacatatttgtacgtaatacataactacttcacaaaaatt |
42920471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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