View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_69 (Length: 235)
Name: NF4381_high_69
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40460741 - 40460962
Alignment:
| Q |
1 |
gatgttcacatttgggaggtttatatgctatatcgaataggaaccatgatatttgaacaatannnnnnnngaacaagtatttgaacaatattttatgtat |
100 |
Q |
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| T |
40460741 |
gatgttcacatttgggaggtttatatgctatatcgaataggaaccatgatatttgaacaatattttttttgaacaagtatttgaacaatattttatgtat |
40460840 |
T |
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| Q |
101 |
agagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattgcactaattgaaaaagaagcattaat |
200 |
Q |
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| T |
40460841 |
agagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattacactaattgaaaaagaagcattaat |
40460940 |
T |
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| Q |
201 |
gcttctttaatatagtaaaatt |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
40460941 |
gcttcgttaatatagtaaaatt |
40460962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 40379030 - 40378878
Alignment:
| Q |
78 |
tatttgaacaatattttatgtatagagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattgca |
177 |
Q |
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| T |
40379030 |
tatttgaacaatattttatgtatagtgtattttacaaagttatcattcatctgtgttagtagaaaaataaattagaagaaattgaaagggagaaattgca |
40378931 |
T |
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| Q |
178 |
ctaatt--------gaaaaagaagcattaatgcttctttaatatagtaaaatt |
222 |
Q |
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| T |
40378930 |
ctaattgaaagagagaaaaaaaagcattaacgcttcgttaatatagtaaaatt |
40378878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40379077 - 40379018
Alignment:
| Q |
1 |
gatgttcacatttgggaggtttatatgctatatcgaataggaaccatgatatttgaacaata |
62 |
Q |
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| T |
40379077 |
gatgttcacatttgggagatttatatgctat--cgaataggaaccatgatatttgaacaata |
40379018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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