View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_high_7 (Length: 610)
Name: NF4381_high_7
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 562
Target Start/End: Complemental strand, 50549564 - 50549029
Alignment:
| Q |
17 |
aacatcaacaattaatgggtttattataaaccatgaaattccttgtgctatgatacttggtgaggaaaagcatacatccccatacaaggataatgggtct |
116 |
Q |
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| T |
50549564 |
aacatcaacaattaatgggtctattctaaaccatgaaattccttgtgctatgatacttggtgaggaaaagcatacacccccatacaaggataacgggtct |
50549465 |
T |
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| Q |
117 |
atggaaacaacgtagcttccaggtttactgccctctaaatctaaatttgttttatgatgaatgccttcaatgatttaagtatccttagttggaatattag |
216 |
Q |
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| T |
50549464 |
atggaaacaacgtagcttccaggtttactgccctctaaatcttaatttgttttatgatgaatgctttcaatgatttaagtatccttagttggaatattag |
50549365 |
T |
|
| Q |
217 |
aggtgcagttagttctgaagggaaacgacaagctcatgtccttattcgtcgttataacccgatgttaatagttcttatggaaacccactgccaatttgct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50549364 |
aggtgcagttagttctgaagggaaacgacaagctcatgtccttattcgtcgttataacccgatgttaatagttcttatggaaacccactgccaatttgct |
50549265 |
T |
|
| Q |
317 |
agagttgctaatttatggcaaggcttggggtatgtgaaatgtgccatctctgtgccatctctgaggcaacgaggcatgctggaggtatatggatcctaaa |
416 |
Q |
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| T |
50549264 |
agagttgctaatttctggcaaggcttggggtatgtgaaatgtgccatc-----------tctgaggcaacgaggcatgctggaggtatatggatcctaaa |
50549176 |
T |
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| Q |
417 |
atcaattaattgtaactatgtcattgatattgtggacacttacttccaagctgtgactgtttctttaaagagtgataacaagatgt-gnnnnnnnnacag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
50549175 |
atcaattaattgtaactatgtcattgatattgtggacacttacttccaagctgtgactgtttctttaaagagtgataacaagatgtggttttttttacag |
50549076 |
T |
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| Q |
516 |
gagtttatgctagtcctcgaattaccaacagagataatctttgggga |
562 |
Q |
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| T |
50549075 |
gagtttatgctagtcctcgaattaccaacagagataatctttgggga |
50549029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 232 - 446
Target Start/End: Original strand, 19759385 - 19759588
Alignment:
| Q |
232 |
tgaagggaaacgacaagctcatgtccttattcgtcgttataacccgatgttaatagttcttatggaaacccactgccaatttgctagagttgctaattta |
331 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19759385 |
tgaagggaaacgacaagctcgtgtccttattcgtcgttataacccgatgttgatagttcttatggaaacccattgccaatttgctagagttgctaatttc |
19759484 |
T |
|
| Q |
332 |
tggcaaggcttggggtatgtgaaatgtgccatctctgtgccatctctgaggcaacgaggcatgctggaggtatatggatcctaaaatcaattaattgtaa |
431 |
Q |
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| T |
19759485 |
tggcaaggcttggggtatgtgaaa-----------tgtgccatctctaaggcaacggggcatgctggaggtatatggatcctaaaatcaattaattgtaa |
19759573 |
T |
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| Q |
432 |
ctatgtcattgatat |
446 |
Q |
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||||||||||||||| |
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| T |
19759574 |
ctatgtcattgatat |
19759588 |
T |
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Back To:
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