View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_1 (Length: 949)

Name: NF4381_low_1
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_1
NF4381_low_1
[»] chr5 (15 HSPs)
chr5 (1-691)||(10412217-10412898)
chr5 (418-671)||(10410664-10410908)
chr5 (713-949)||(10408630-10408882)
chr5 (418-627)||(25725808-25726010)
chr5 (418-603)||(25502025-25502201)
chr5 (533-627)||(40382864-40382959)
chr5 (418-496)||(8081534-8081612)
chr5 (539-603)||(25507050-25507115)
chr5 (652-690)||(25502229-25502267)
chr5 (655-708)||(21637364-21637416)
chr5 (417-501)||(6742569-6742653)
chr5 (421-489)||(40382760-40382828)
chr5 (418-487)||(25506938-25507007)
chr5 (655-690)||(4895928-4895963)
chr5 (713-751)||(4857475-4857513)
[»] chr4 (6 HSPs)
chr4 (475-708)||(25054166-25054390)
chr4 (416-603)||(4847686-4847865)
chr4 (420-602)||(28395555-28395732)
chr4 (549-627)||(11809887-11809966)
chr4 (655-708)||(18807582-18807634)
chr4 (634-690)||(11809948-11810005)
[»] chr3 (11 HSPs)
chr3 (450-708)||(4608947-4609183)
chr3 (418-664)||(4602166-4602403)
chr3 (418-603)||(28133653-28133830)
chr3 (418-627)||(27682101-27682301)
chr3 (418-496)||(41874542-41874620)
chr3 (422-529)||(26667002-26667111)
chr3 (533-601)||(27972530-27972595)
chr3 (609-645)||(27683855-27683891)
chr3 (655-708)||(26667218-26667268)
chr3 (713-751)||(20945284-20945322)
chr3 (713-751)||(39931965-39932003)
[»] chr2 (12 HSPs)
chr2 (418-627)||(45035064-45035265)
chr2 (418-627)||(45033269-45033470)
chr2 (418-603)||(1015655-1015831)
chr2 (554-603)||(17308628-17308677)
chr2 (533-582)||(33187280-33187329)
chr2 (417-489)||(14007778-14007850)
chr2 (634-708)||(45035008-45035082)
chr2 (418-496)||(17308719-17308797)
chr2 (442-529)||(3372476-3372564)
chr2 (555-602)||(4399574-4399621)
chr2 (652-690)||(17308562-17308600)
chr2 (442-488)||(33187197-33187243)
[»] chr7 (7 HSPs)
chr7 (567-671)||(964953-965057)
chr7 (418-603)||(21464439-21464622)
chr7 (442-496)||(29924662-29924716)
chr7 (654-708)||(21631449-21631502)
chr7 (544-582)||(29924591-29924629)
chr7 (639-670)||(965049-965080)
chr7 (655-690)||(9878367-9878402)
[»] chr1 (5 HSPs)
chr1 (416-627)||(44782181-44782385)
chr1 (572-670)||(9217499-9217597)
chr1 (418-627)||(46679609-46679812)
chr1 (658-697)||(35891592-35891631)
chr1 (713-751)||(32152242-32152280)
[»] chr8 (8 HSPs)
chr8 (418-627)||(30634229-30634431)
chr8 (533-627)||(1175018-1175113)
chr8 (440-501)||(35674859-35674920)
chr8 (419-518)||(35673333-35673433)
chr8 (634-708)||(1174962-1175036)
chr8 (418-496)||(1175145-1175223)
chr8 (655-690)||(35673507-35673542)
chr8 (713-751)||(36309579-36309617)
[»] chr6 (6 HSPs)
chr6 (416-582)||(15688988-15689146)
chr6 (533-603)||(24544662-24544732)
chr6 (532-603)||(34350440-34350511)
chr6 (449-525)||(9373602-9373679)
chr6 (660-708)||(33869194-33869241)
chr6 (660-690)||(15868357-15868387)
[»] scaffold0570 (1 HSPs)
scaffold0570 (532-582)||(3043-3093)
[»] scaffold0060 (1 HSPs)
scaffold0060 (655-708)||(9188-9240)
[»] scaffold0251 (1 HSPs)
scaffold0251 (660-690)||(6191-6221)


Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Complemental strand, 10412898 - 10412217
Alignment:
Q  1 aatctgccaagttcatgaacatagatatatagtaccacagccagtacagacagacccagattgacaagctatactctaatgtatgtggtacaacttggtt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10412898 aatctgccaagttcatgaacatagatatctagtaccacagccagtacagacagacccagattgacaagctatactctaatgtatgtggtacaacttggtt 10412799  T
Q  101 ggtaatatcaatcattaagactctattaagtaagacaaattgattctaattgttaggtaagtgtttgtactcttatggctgcctaaatacttctttgcgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10412798 ggtaatatcaatcattaagactctattaagtaagacaaattgattctaattgttaggtaagtgtttgtactcttatggctacctaaatacttctttgcgt 10412699  T
Q  201 caaaatgaatgactcatttgtnnnnnnnnttgtcttaaaaggaatgataagtaaaaatattaattttctcatttagttatgcctttttaatctatgaaaa 300  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10412698 caaaatgaatgactcatttgtaaaaaaaattgtcttaaaaggaatgataagtaaaaatattaattttctcattcagttatgcctttttaatctatgaaaa 10412599  T
Q  301 atgtttaaaaatgtcactcattgcaggacggatagagtaagaaacgaattcaaacaaaaattgtccatgcaattgaatgagcaagaaatataaattataa 400  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10412598 atgtttaaaaatgtcactcattgcaggacggatggagtaagaaacgaattcaaataaaaattgtccatgcaattgaatgagcaagaaatataaattataa 10412499  T
Q  401 atcataggtcaagggagtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac- 499  Q
    |||||||||||| | |||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||  | | |||||     
T  10412498 atcataggtcaaagaagtgttataaattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattttctctaagaattatcaca 10412399  T
Q  500 aagatgcaaatgaataaaatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttct 599  Q
    |||||||||||||||          |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10412398 aagatgcaaatgaat----------aaaagatatgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttct 10412309  T
Q  600 actaggttacttgctctccaagttatctagattgcttgcactccaaattaccttctcactatactctaatagtccccctcaaactcaaaatt 691  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10412308 actaggttacttgctctccaagttatctggattgcttgcactccaaattaccttctcactatactctaatagtccccctcaaactcaaaatt 10412217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 418 - 671
Target Start/End: Complemental strand, 10410908 - 10410664
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  10410908 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcccaaagatgcaaatgaataa 10410809  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctct 616  Q
    || ||||||||           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  10410808 aagatgtgaaat----------agtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctactaggttacttgctct 10410719  T
Q  617 ccaagttatctagattgcttgcactccaaattaccttctcactatactctaatag 671  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  10410718 ccaagttatctagattgcttgcactccaagttaccttttcactatactctaatag 10410664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 713 - 949
Target Start/End: Complemental strand, 10408882 - 10408630
Alignment:
Q  713 gtattaaattttacttttcatattttaagaaaagttagttgaagtaataataataattagaggtatgtttaggtgtttatataaggataatttaaacaaa 812  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  10408882 gtattcaatattacttttcatattttaagaaaagttagttggagtaataataatagttaaaggtatgtttaggtgtttatataaggataatttaaacaga 10408783  T
Q  813 aatttattatttaaggataatctttagtcaaataggtgtttatatatagagactgccccagtaaaaact---------------actttgaatagtgatg 897  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||  |||| ||||||||               ||||||||||||||||    
T  10408782 aatttatcatttaagaataatctttagttaaataggtgtttatatacagagactcgcccaataaaaactacttaactaaagactactttgaatagtgatg 10408683  T
Q  898 -attttttgtgtgcaaattccattcgagaaacatcatcatagttttccaacct 949  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10408682 cattttttgtgtgcaaattccattcgagaaacatcatcatagttttccaacct 10408630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 418 - 627
Target Start/End: Original strand, 25725808 - 25726010
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | ||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||  |||  | ||||    
T  25725808 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaatcgtataa 25725907  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctc 615  Q
    || ||     |||    |||| |||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||| ||| | ||||||||    
T  25725908 aagat-----aat----gaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctc 25725998  T
Q  616 tccaagttatct 627  Q
    ||||||||||||    
T  25725999 tccaagttatct 25726010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 418 - 603
Target Start/End: Original strand, 25502025 - 25502201
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatca-caagatgcaaatgaataa 516  Q
    |||||||||| | || ||| | ||||||||  ||||||||||| |||| ||||||||||||||||||||||| |||||| | |||||  ||| || ||||    
T  25502025 tgttatgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagtcattatcaagaaacaattgtataa 25502124  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    || || || ||           ||||||||| |||| |||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  25502125 aagatatggaat----------agtacatagatgtaacttatttatagtgaattggagtaactaactccctaactaactttctacta 25502201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 533 - 627
Target Start/End: Original strand, 40382864 - 40382959
Alignment:
Q  533 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 627  Q
    ||||| |||| |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| ||| | |||| ||||||||| |||||    
T  40382864 tgaaatagtatataggtgtagcttatttatagtgacttggagtacctaactccctaactaactttctacatagataacttactctccaagatatct 40382959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 8081612 - 8081534
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 496  Q
    |||||||||| ||||  || | |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  8081612 tgttatgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 8081534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 539 - 603
Target Start/End: Original strand, 25507050 - 25507115
Alignment:
Q  539 agtacataggtgtagcttatttatagtgatttggagtaact-aaccctctaactaactttctacta 603  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| | |||| |||||||||||||    
T  25507050 agtacataggtgtagcttatttatagtgaattggagtaactaaactccctaagtaactttctacta 25507115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 690
Target Start/End: Original strand, 25502229 - 25502267
Alignment:
Q  652 ttctcactatactctaatagtccccctcaaactcaaaat 690  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25502229 ttctcactatactctaatagtccccctcaaactcaaaat 25502267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 21637364 - 21637416
Alignment:
Q  655 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  21637364 tcactatactctaatagtccccctcaaactcaagatt-gagaaattcaccaatt 21637416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 6742653 - 6742569
Alignment:
Q  417 gtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa 501  Q
    ||||||||||| |||  ||| | | ||||||  ||||||||||| ||||||||||||||||| |||||||||  |||||||||||    
T  6742653 gtgttatgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgtatttctctctacgagtcatcacaa 6742569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 40382760 - 40382828
Alignment:
Q  421 tatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctag 489  Q
    ||||||| |||| ||| | | |||||| |||||||||||| |||||||| |||||||||||||||||||    
T  40382760 tatgaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaattctctctag 40382828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 487
Target Start/End: Original strand, 25506938 - 25507007
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctct 487  Q
    |||||||||| |||| ||| | ||||| ||  ||||||||||| |||||||||||| |||||||||||||    
T  25506938 tgttatgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaattctctct 25507007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 690
Target Start/End: Original strand, 4895928 - 4895963
Alignment:
Q  655 tcactatactctaatagtccccctcaaactcaaaat 690  Q
    |||| |||||||||||||||||||||||||||||||    
T  4895928 tcacaatactctaatagtccccctcaaactcaaaat 4895963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 713 - 751
Target Start/End: Complemental strand, 4857513 - 4857475
Alignment:
Q  713 gtattaaattttacttttcatattttaagaaaagttagt 751  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  4857513 gtattaaatttgacttttcatattttaagataagttagt 4857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 5e-68; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 475 - 708
Target Start/End: Complemental strand, 25054390 - 25054166
Alignment:
Q  475 tgtaattctctctagaagtcatcac-aagatgcaaatgaataaaatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttgga 573  Q
    ||||||||||||| ||||||||||| ||||||||| |||||          |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  25054390 tgtaattctctctggaagtcatcacaaagatgcaattgaat----------aaaagatgtgaaatagtacataggtgtagcttatttatagtgatttgga 25054301  T
Q  574 gtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaattaccttctcactatactctaatagtc 673  Q
    ||||||||| | ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  25054300 gtaactaactccctaactaacgttctactatgttacttgctctccaagttctctagattgcttgcacttcaagttaccttctcactatactctaatagtc 25054201  T
Q  674 cccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    |||||| ||||||||||| |  |||||||||||||    
T  25054200 cccctcgaactcaaaattggggaaattcaccaatt 25054166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 416 - 603
Target Start/End: Original strand, 4847686 - 4847865
Alignment:
Q  416 agtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatca-caagatgcaaatgaat 514  Q
    ||||||||||||||||| ||| | |||||||| |||||||| ||| |||||||||||| ||||||||||| |||||||||| | |||||  ||| || ||    
T  4847686 agtgttatgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctctatagaagtcattaccaagaaacaattgtat 4847785  T
Q  515 aaaatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    | || ||          |||| | ||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||    
T  4847786 ataagat---------agtgatatagtacatagatgtagcttatttatagtgacttggagtaactaactccctaactaactttccacta 4847865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 420 - 602
Target Start/End: Original strand, 28395555 - 28395732
Alignment:
Q  420 ttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaa 518  Q
    |||||||| |||| ||| | ||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||  | |  ||| ||     
T  28395555 ttatgaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcacaaagatagatagaaatgaa- 28395653  T
Q  519 tatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctact 602  Q
          |||| || ||||| ||||||  ||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||    
T  28395654 -----taaaagatatgaaatagtacagtggtgtagcttatttatagtgatttggagtaaataactccctaactaattttctact 28395732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 549 - 627
Target Start/End: Original strand, 11809887 - 11809966
Alignment:
Q  549 tgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 627  Q
    ||||| || |||||||||| |||||||||||||| | |||||||||||||||| ||| | ||||||||||||||||||||    
T  11809887 tgtagtttgtttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatct 11809966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 18807582 - 18807634
Alignment:
Q  655 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  18807582 tcactatactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaatt 18807634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 690
Target Start/End: Original strand, 11809948 - 11810005
Alignment:
Q  634 cttgcactccaaattaccttct-cactatactctaatagtccccctcaaactcaaaat 690  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||||||||| |||||    
T  11809948 cttgctctccaagttatcttcttcactatactctaatagtccccctcaaacttaaaat 11810005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 1e-53; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 450 - 708
Target Start/End: Complemental strand, 4609183 - 4608947
Alignment:
Q  450 tcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaatatgtgaaaatatgtgaaacagtacatagg 548  Q
    ||||||||||| ||||| || ||||| || |||||||||| ||||||||||| ||||||| ||||||||| || |||||           ||||||||||    
T  4609183 tcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattgaataaaagatatgaaat----------agtacatagg 4609094  T
Q  549 tgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaatt 648  Q
    ||||||||||||||||||||||||||||||||||            |||||| || ||||||||||||||||||||||||||||||||||||||||| ||    
T  4609093 tgtagcttatttatagtgatttggagtaactaac------------tttctattatgttacttgctctccaagttatctagattgcttgcactccaagtt 4609006  T
Q  649 accttctcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  4609005 accttctcactatactctaatagtccccctcaaactcaaaa-tggaaaaattcactaatt 4608947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 418 - 664
Target Start/End: Complemental strand, 4602403 - 4602166
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | ||||||||  ||||||||||| ||||| || ||||| || |||||||||  |||||| |||| ||||||| | |||||    
T  4602403 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtatagttctctctatgagtcataacaaagatgcaattaaataa 4602304  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctct 616  Q
    || || |||||           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  4602303 aagatatgaaat----------agtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctactatgttacttgctct 4602214  T
Q  617 ccaagttatctagattgcttgcactccaaattaccttctcactatact 664  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  4602213 ccaagttatcttgattgcttgcactacaagttaccttctcactatact 4602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 418 - 603
Target Start/End: Complemental strand, 28133830 - 28133653
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | ||||||||  ||||||||||| ||||| || |||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  28133830 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattgaataa 28133731  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    || |||         |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  28133730 aagatg---------gtgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactctctaactaactttctacta 28133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 418 - 627
Target Start/End: Complemental strand, 27682301 - 27682101
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | ||||||||  ||||||||||| ||||| || |||||||| |||||||||| ||||||||||| |||||||||||||||    
T  27682301 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaaatgaataa 27682202  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctct 616  Q
    || ||||| ||           ||||||||||| | |||||||||| ||||||||||||||||||| | |||||||||||| |||||| || ||||||||    
T  27682201 aagatgtggaat----------agtacataggtcttgcttatttattgtgatttggagtaactaactccctaactaactttatactagattgcttgctct 27682112  T
Q  617 ccaagttatct 627  Q
    |||||||||||    
T  27682111 ccaagttatct 27682101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 41874620 - 41874542
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 496  Q
    |||||||||| |||| ||| | |||||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  41874620 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaattctctctaggagtcat 41874542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 26667002 - 26667111
Alignment:
Q  422 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagat-gcaaatgaataaaat 519  Q
    |||||| |||| ||||| ||||||||  |||||||| || ||||| ||||||||||||||||| |||  ||||||||| ||||| | ||||||||||||     
T  26667002 atgaatcaaaggatttcatggttctagatcaaatgcgatggaaaggtagattgtgtaattctccctaagagtcatcacaaagatagaaaatgaataaaag 26667101  T
Q  520 atgtgaaaat 529  Q
    || |||||||    
T  26667102 atatgaaaat 26667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 27972595 - 27972530
Alignment:
Q  533 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac 601  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||| | |||  ||||||||||||||||||    
T  27972595 tgaaatagtacattggtgtagctgatttatagtgatttggagt-agtaa--ctctaactaactttctac 27972530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 609 - 645
Target Start/End: Original strand, 27683855 - 27683891
Alignment:
Q  609 cttgctctccaagttatctagattgcttgcactccaa 645  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27683855 cttgctctccaagttatctagattgcttgctctccaa 27683891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 26667218 - 26667268
Alignment:
Q  655 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    |||||||||| ||||||||||||||||||||||   | ||||||||||||||||    
T  26667218 tcactatactgtaatagtccccctcaaactcaa---tggaaaaattcaccaatt 26667268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 713 - 751
Target Start/End: Complemental strand, 20945322 - 20945284
Alignment:
Q  713 gtattaaattttacttttcatattttaagaaaagttagt 751  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  20945322 gtattaaatttgacttttcatattttaagacaagttagt 20945284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 713 - 751
Target Start/End: Original strand, 39931965 - 39932003
Alignment:
Q  713 gtattaaattttacttttcatattttaagaaaagttagt 751  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  39931965 gtattaaattttagttttcatattttaagacaagttagt 39932003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 418 - 627
Target Start/End: Complemental strand, 45035265 - 45035064
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | ||||||||  ||||||||||| |||||||||||||| || |||||||||| ||||||||||| |||||||||||||||    
T  45035265 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcatcacaaagatgcaaatgaataa 45035166  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctc 615  Q
    || || ||||| |||         |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| | ||||||||    
T  45035165 aagatttgaaa-tat---------tacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctacatagataacttgctc 45035076  T
Q  616 tccaagttatct 627  Q
    ||||||||||||    
T  45035075 tccaagttatct 45035064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 418 - 627
Target Start/End: Complemental strand, 45033470 - 45033269
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataa 516  Q
    |||||||||| |||  ||| | ||||||||  ||||||||||| |||||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||    
T  45033470 tgttatgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcatcacaaagatgcaaatgaataa 45033371  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctc 615  Q
    || || ||||            ||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||| ||| | ||||||||    
T  45033370 aagatatgaatt----------agtacataggtgtagcttatttacagtgatttggggtaactaactccctaactaactttctacatagataacttgctc 45033281  T
Q  616 tccaagttatct 627  Q
    ||||||||||||    
T  45033280 tccaagttatct 45033269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 418 - 603
Target Start/End: Complemental strand, 1015831 - 1015655
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | ||||||||  ||||||||||| |||||||||||||||||||||||||| | |||| | || ||||  ||| || ||||    
T  1015831 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctcttggagtcgttaccaagaaacaattgtataa 1015732  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    || || || ||           ||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  1015731 aagatatggaat----------agtacataggtgtggcttatttatagtgatttggagtaactaactccgtaactaactttctacta 1015655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 603
Target Start/End: Complemental strand, 17308677 - 17308628
Alignment:
Q  554 cttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  17308677 cttatttatagtgatttggagtaactaactccctaactaactttctacta 17308628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 582
Target Start/End: Original strand, 33187280 - 33187329
Alignment:
Q  533 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaac 582  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  33187280 tgaaatagtacataggtgtagcttatttatagtgacttggagtaactaac 33187329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 14007850 - 14007778
Alignment:
Q  417 gtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctag 489  Q
    ||||||||||| |||| ||| | |||||||| |||||||||||| ||||||| |||||| |||||||||||||    
T  14007850 gtgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctag 14007778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 634 - 708
Target Start/End: Complemental strand, 45035082 - 45035008
Alignment:
Q  634 cttgcactccaaattaccttct-cactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    ||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  45035082 cttgctctccaagttatcttctacactatactctaatagtccccctcaaactcaaaa-tagggaaattcaccaatt 45035008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 17308797 - 17308719
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 496  Q
    |||||||||| |||| ||| | | ||||||  ||||||||||| ||||||||||||||||||||| |||||| ||||||    
T  17308797 tgttatgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaattcactctaggagtcat 17308719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 529
Target Start/End: Original strand, 3372476 - 3372564
Alignment:
Q  442 gttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaatatgtgaaaat 529  Q
    |||||| ||||||| |||| |||||||||||| | ||||||||||| | ||||| ||| |||||  ||||||||||||||| |||||||    
T  3372476 gttctaggtcaaatacaatggaaagatagattctataattctctctgggagtcaccacaaagataaaaatgaataaaatatatgaaaat 3372564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 4399574 - 4399621
Alignment:
Q  555 ttatttatagtgatttggagtaactaaccctctaactaactttctact 602  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||    
T  4399574 ttatttatagtgagttggagtaactaactccctaactaactttctact 4399621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 652 - 690
Target Start/End: Complemental strand, 17308600 - 17308562
Alignment:
Q  652 ttctcactatactctaatagtccccctcaaactcaaaat 690  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  17308600 ttctcactatattctaatagtccccctcaaactcaaaat 17308562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 33187197 - 33187243
Alignment:
Q  442 gttctaagtcaaatgcaatcgaaagatagattgtgtaattctctcta 488  Q
    |||||| |||||||| ||| |||||||||||||||||||| ||||||    
T  33187197 gttctaggtcaaatgtaatggaaagatagattgtgtaattatctcta 33187243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 5e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 567 - 671
Target Start/End: Complemental strand, 965057 - 964953
Alignment:
Q  567 atttggagtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaattaccttctcactatactct 666  Q
    |||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  965057 atttggagtaactaactccctaactaactttctactatattacttgctctccaagttatctagattgcttgcactccaagttaccttctcactatactct 964958  T
Q  667 aatag 671  Q
    |||||    
T  964957 aatag 964953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 418 - 603
Target Start/End: Complemental strand, 21464622 - 21464439
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctct--agaagtcatcacaa--gatgcaaatgaa 513  Q
    |||||| ||| |||||||| | ||||||||  ||||||||||| ||||||||||||||||||||||||||  || |||||| ||||  |  | |||||||    
T  21464622 tgttataaatcaaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctctaggagtcattacaaaggtagaaaatgaa 21464523  T
Q  514 taaaatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    | ||       |||| | || ||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  21464522 tgaat------aaaagaagtaaaatagtacataagtgtagcttatttacagtgatttggagtaactaaccccctaactaactttctacta 21464439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 29924716 - 29924662
Alignment:
Q  442 gttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 496  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  29924716 gttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 29924662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 654 - 708
Target Start/End: Original strand, 21631449 - 21631502
Alignment:
Q  654 ctcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    |||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  21631449 ctcactatactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaatt 21631502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 544 - 582
Target Start/End: Complemental strand, 29924629 - 29924591
Alignment:
Q  544 ataggtgtagcttatttatagtgatttggagtaactaac 582  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29924629 ataggtgtagcttatttatagtgacttggagtaactaac 29924591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 670
Target Start/End: Original strand, 965049 - 965080
Alignment:
Q  639 actccaaattaccttctcactatactctaata 670  Q
    ||||||||||||||||||||||||||||||||    
T  965049 actccaaattaccttctcactatactctaata 965080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 690
Target Start/End: Original strand, 9878367 - 9878402
Alignment:
Q  655 tcactatactctaatagtccccctcaaactcaaaat 690  Q
    |||||||||||||||||||| |||||||||||||||    
T  9878367 tcactatactctaatagtcctcctcaaactcaaaat 9878402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 416 - 627
Target Start/End: Original strand, 44782181 - 44782385
Alignment:
Q  416 agtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaat 514  Q
    ||||||||||||||||| ||| | |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| || ||||  ||| || ||    
T  44782181 agtgttatgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtat 44782280  T
Q  515 aaaatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgc 613  Q
    |||| ||     |||    |||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| | ||||||    
T  44782281 aaaagat-----aat----gaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgc 44782371  T
Q  614 tctccaagttatct 627  Q
    |||| |||||||||    
T  44782372 tctctaagttatct 44782385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 572 - 670
Target Start/End: Complemental strand, 9217597 - 9217499
Alignment:
Q  572 gagtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaattaccttctcactatactctaata 670  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9217597 gagtaattaactccctaactaactttctactagattacttgctctccaagatatctagattgcttgcactccaagttaccttctcactatactctaata 9217499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 418 - 627
Target Start/End: Complemental strand, 46679812 - 46679609
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataa 516  Q
    |||||||||| |||| ||| | ||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||  ||| || ||||    
T  46679812 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattgtataa 46679713  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac--taggttacttgct 614  Q
    || |||          ||||  ||||||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||  ||| || ||||||    
T  46679712 aagatga---------tgaagtagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaattttctactatagtttgcttgct 46679622  T
Q  615 ctccaagttatct 627  Q
    | |||||||||||    
T  46679621 ccccaagttatct 46679609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 697
Target Start/End: Original strand, 35891592 - 35891631
Alignment:
Q  658 ctatactctaatagtccccctcaaactcaaaattagaaaa 697  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  35891592 ctatactctaatagtccccctcaaactctaaatgagaaaa 35891631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 713 - 751
Target Start/End: Original strand, 32152242 - 32152280
Alignment:
Q  713 gtattaaattttacttttcatattttaagaaaagttagt 751  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  32152242 gtattaaatttgacttttcatattttaagataagttagt 32152280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 418 - 627
Target Start/End: Original strand, 30634229 - 30634431
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataa 516  Q
    |||||||||| |||| |||   ||||| || |||||||||||| |||||||||||| ||||||||||||||  |||||| || ||||  ||| || ||||    
T  30634229 tgttatgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtcattactaagaaacaattgtataa 30634328  T
Q  517 aatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctc 615  Q
    || ||     |||    |||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| | ||||||||    
T  30634329 aagat-----aat----gaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctc 30634419  T
Q  616 tccaagttatct 627  Q
    ||||||||||||    
T  30634420 tccaagttatct 30634431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 533 - 627
Target Start/End: Complemental strand, 1175113 - 1175018
Alignment:
Q  533 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 627  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||| | | | |||||||||||| ||| | ||||||||||||||||||||    
T  1175113 tgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccccacctaactttctacatagataacttgctctccaagttatct 1175018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 440 - 501
Target Start/End: Original strand, 35674859 - 35674920
Alignment:
Q  440 tggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa 501  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  35674859 tggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcatcacaa 35674920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 419 - 518
Target Start/End: Original strand, 35673333 - 35673433
Alignment:
Q  419 gttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcaca-agatgcaaatgaataaa 517  Q
    |||||||| || || ||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||  | |||||||| ||||  |||||||||||    
T  35673333 gttatgaaatagaggattccatggttctaagtcaaatgcaatggaaagatagattgtataattctctctatgaatcatcacagagatataaatgaataaa 35673432  T
Q  518 a 518  Q
    |    
T  35673433 a 35673433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 634 - 708
Target Start/End: Complemental strand, 1175036 - 1174962
Alignment:
Q  634 cttgcactccaaattaccttct-cactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  1175036 cttgctctccaagttatcttcttcactatactctaatagtcctcctcaaactcaaaa-tggaaaaattcaccaatt 1174962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 1175223 - 1175145
Alignment:
Q  418 tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 496  Q
    ||||||||||||||| |||   |||||||| |||||||| |||  ||||||||||||||||||| | ||||| ||||||    
T  1175223 tgttatgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagtcat 1175145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 690
Target Start/End: Original strand, 35673507 - 35673542
Alignment:
Q  655 tcactatactctaatagtccccctcaaactcaaaat 690  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35673507 tcactatactctattagtccccctcaaactcaaaat 35673542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 713 - 751
Target Start/End: Complemental strand, 36309617 - 36309579
Alignment:
Q  713 gtattaaattttacttttcatattttaagaaaagttagt 751  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  36309617 gtattaaatttgacttttcatattttaagacaagttagt 36309579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 7e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 416 - 582
Target Start/End: Complemental strand, 15689146 - 15688988
Alignment:
Q  416 agtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaat 514  Q
    |||||||||||| |||| ||| | || ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||  ||||||||    
T  15689146 agtgttatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctctag-agtcatcacaaagatagaaatgaat 15689048  T
Q  515 aaaatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaac 582  Q
    ||        |||| ||   ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  15689047 aa--------aaaagatagaaaatagtacataggagtagcttatttatagtgatttggagtaactaac 15688988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 533 - 603
Target Start/End: Complemental strand, 24544732 - 24544662
Alignment:
Q  533 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  24544732 tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctacta 24544662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 532 - 603
Target Start/End: Original strand, 34350440 - 34350511
Alignment:
Q  532 gtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 603  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  34350440 gtgaaatagtacataggtgtagtttatttataatgatttggagtaactaactccctaactaactttctacta 34350511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 525
Target Start/End: Original strand, 9373602 - 9373679
Alignment:
Q  449 gtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaatatgtga 525  Q
    |||||||||||| |||||||||| ||||||||| ||| ||| |||||| || |||||  |||||||||||| ||||||    
T  9373602 gtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcataacaaagatataaatgaataaaagatgtga 9373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 660 - 708
Target Start/End: Complemental strand, 33869241 - 33869194
Alignment:
Q  660 atactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||    
T  33869241 atactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaatt 33869194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 690
Target Start/End: Complemental strand, 15868387 - 15868357
Alignment:
Q  660 atactctaatagtccccctcaaactcaaaat 690  Q
    |||||||||||||||||||||||||||||||    
T  15868387 atactctaatagtccccctcaaactcaaaat 15868357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 532 - 582
Target Start/End: Original strand, 3043 - 3093
Alignment:
Q  532 gtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaac 582  Q
    |||||| ||||||| |||||||| |||||||||||| ||||||||||||||    
T  3043 gtgaaatagtacatcggtgtagcatatttatagtgacttggagtaactaac 3093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 9188 - 9240
Alignment:
Q  655 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 708  Q
    |||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  9188 tcactatactctaatagtcctcctcaaactcaagatt-gagaaattcaccaatt 9240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 690
Target Start/End: Complemental strand, 6221 - 6191
Alignment:
Q  660 atactctaatagtccccctcaaactcaaaat 690  Q
    |||||||||||||||||||||||||||||||    
T  6221 atactctaatagtccccctcaaactcaaaat 6191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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