View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_10 (Length: 599)

Name: NF4381_low_10
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_10
NF4381_low_10
[»] chr2 (30 HSPs)
chr2 (77-580)||(39223101-39223605)
chr2 (1-200)||(39215753-39215951)
chr2 (384-580)||(39162964-39163161)
chr2 (384-580)||(39196801-39196997)
chr2 (384-580)||(39206033-39206230)
chr2 (3-210)||(39192190-39192399)
chr2 (3-210)||(39197872-39198079)
chr2 (387-549)||(39380798-39380962)
chr2 (384-552)||(39387813-39387985)
chr2 (2-198)||(39370254-39370451)
chr2 (260-353)||(39216139-39216232)
chr2 (392-551)||(39370818-39370979)
chr2 (270-352)||(39162358-39162440)
chr2 (270-352)||(39206754-39206836)
chr2 (3-176)||(39161968-39162140)
chr2 (3-176)||(39207054-39207226)
chr2 (3-176)||(39388879-39389054)
chr2 (258-345)||(39191933-39192020)
chr2 (3-134)||(39381276-39381407)
chr2 (1-71)||(39222967-39223037)
chr2 (258-331)||(39388604-39388677)
chr2 (387-552)||(39216353-39216520)
chr2 (258-351)||(39370601-39370695)
chr2 (443-551)||(39396972-39397080)
chr2 (3-43)||(39421688-39421728)
chr2 (3-35)||(39468453-39468485)
chr2 (283-336)||(39197623-39197676)
chr2 (259-303)||(39414266-39414310)
chr2 (427-486)||(39473131-39473191)
chr2 (443-511)||(44895443-44895511)
[»] chr5 (3 HSPs)
chr5 (384-580)||(33561983-33562180)
chr5 (3-206)||(33561140-33561348)
chr5 (3-43)||(17059602-17059642)
[»] chr6 (1 HSPs)
chr6 (448-552)||(16114126-16114230)
[»] chr8 (1 HSPs)
chr8 (14-167)||(45342187-45342343)
[»] chr7 (1 HSPs)
chr7 (1-95)||(19807965-19808059)


Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 77 - 580
Target Start/End: Original strand, 39223101 - 39223605
Alignment:
Q  77 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 176  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 39223200  T
Q  177 tccacaaagtgtcaaactaatttggattatcttgctactgctattgaaagattagtttagtatattaatgtagttttaattacattgagaggcacttaat 276  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39223201 tccacaaactgtcaaactaatttggattatcttgctactgctattgaaagattagtttagtatattaatgtagttctaattacattgagaggcacttaat 39223300  T
Q  277 agtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagttaacttgcatactannnnnnnnnnnn 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                
T  39223301 agtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacaccttctccgttgattcagttaacttgcatactattttttttattt 39223400  T
Q  377 nnnaaagtcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctac-atctaaatatgcagttgcatcttacatgtatgg 475  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  39223401 tttaaagtcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctactatctaaatatgcagttgcatcttacatgtatga 39223500  T
Q  476 tcaatcaagtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaacggtgttttagttaatctg 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39223501 tcaatcaagtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaatggtgttttagttaatctg 39223600  T
Q  576 caaga 580  Q
    |||||    
T  39223601 caaga 39223605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 39215753 - 39215951
Alignment:
Q  1 cgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215753 cgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttg 39215852  T
Q  101 tttaaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtcaaactaatttg 200  Q
    |||||||||||||||||||||||||||||| ||| | || | | || || |||  ||||| ||||||| ||||||| ||||| | |||||||| ||||||    
T  39215853 tttaaaaatatttttaatcatgttaatgttttatgtctttgtc-atattgaaattttttctagttttcatatcacacccacacattgtcaaacaaatttg 39215951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 384 - 580
Target Start/End: Original strand, 39162964 - 39163161
Alignment:
Q  384 tcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctacat-ctaaatatgcagttgcatcttacatgtatggtcaatca 482  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| | | |||||||||||||||||||||||| ||| ||||||     
T  39162964 tcttattgtcactatcatttactgatgtttccataaatttgaaaagcttaaatatctactttcaaaatatgcagttgcatcttacatgcatgatcaatct 39163063  T
Q  483 agtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaacggtgttttagttaatctgcaaga 580  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||||| | || |||| ||| ||| |||||||||||||||||||    
T  39163064 agtcgtgcctttggtggaacaagtctgcagttgggcacaagcgagaaaactgacggagttcaatctctttacaatggtattttagttaatctgcaaga 39163161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 384 - 580
Target Start/End: Complemental strand, 39196997 - 39196801
Alignment:
Q  384 tcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctac-atctaaatatgcagttgcatcttacatgtatggtcaatca 482  Q
    ||||||||| | ||||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||| | | |||||||    
T  39196997 tcttattgttattatcattta-tgatgcttctataaatatggagagcttaaatatctgctatctaaatatgcagttgaatcttacatggacgatcaatca 39196899  T
Q  483 agtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaacggtgttttagttaatctgcaaga 580  Q
    || | |||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  39196898 agccgtgcctttggtggaagaagtttgcagttggacacaagtgagaaaactgatggagttgagtcacttttcaacagtattttagttaatctgcaaga 39196801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 384 - 580
Target Start/End: Complemental strand, 39206230 - 39206033
Alignment:
Q  384 tcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctacat-ctaaatatgcagttgcatcttacatgtatggtcaatca 482  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| | | |||||||||||||||||||||||| ||| ||||||     
T  39206230 tcttattgtcactatcatttactgatgtttccataaatttgaaaagcttaaatatctactttcaaaatatgcagttgcatcttacatgcatgatcaatct 39206131  T
Q  483 agtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaacggtgttttagttaatctgcaaga 580  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||||| | || |||| ||| ||| |||||||||||||||||||    
T  39206130 agtcgtgcctttggtggaacaagtctgcagttgggcacaagcgagaaaactgacggagttcaatctctttacaatggtattttagttaatctgcaaga 39206033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 39192399 - 39192190
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtt 102  Q
    ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  ||||||||||||||||||| | ||||||||||  ||||||| || || ||    
T  39192399 ggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattctt 39192300  T
Q  103 taaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaa--gtgtcaaactaatttg 200  Q
    |||||| ||||||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||| ||||||||||||| |  |||||||||||||||     
T  39192299 taaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagactgtgtcaaactaatttc 39192200  T
Q  201 gattatcttg 210  Q
    ||||||||||    
T  39192199 gattatcttg 39192190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 39198079 - 39197872
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtt 102  Q
    ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  ||||||||||||||||||| | ||||||||||  ||||||| || || ||    
T  39198079 ggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattctt 39197980  T
Q  103 taaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtcaaactaatttgga 202  Q
    |||||| ||||||||||||||||||||| ||| |||||| |||||| ||||| |||||| |||||| | ||||||||||| | |||||||||||||| ||    
T  39197979 taaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttcccgttttcatttcacatccacagactgtcaaactaatttcga 39197880  T
Q  203 ttatcttg 210  Q
    ||||||||    
T  39197879 ttatcttg 39197872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 387 - 549
Target Start/End: Complemental strand, 39380962 - 39380798
Alignment:
Q  387 tattgtcactatcatttactgatgtttctataaatatgaag-agcttaaatatctac-atctaaatatgcagttgcatcttacatgtatggtcaatcaag 484  Q
    |||||||||||||||||||||| | |||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||| ||| || || |||    
T  39380962 tattgtcactatcatttactgacgcttctataaatatgagggagcttaaatatctgctatctaaatatgcagttgcatcttacatggatgatcgattaag 39380863  T
Q  485 tcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcac 549  Q
    |||| || |||| |||| ||||||||||||||  ||||| |||||||||| || |||||||||||    
T  39380862 tcataccattgggggaacaagtttgcagttggatacaagtgagaaaactgttgcagttgagtcac 39380798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 384 - 552
Target Start/End: Complemental strand, 39387985 - 39387813
Alignment:
Q  384 tcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatat---ctacat-ctaaatatgcagttgcatcttacatgtatggtcaa 479  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||   || | | ||||||||||||||| |||||||||| ||| ||||    
T  39387985 tcttattgtcactatcatttactgatgcttctgtaaatatgaagagcttaattattatctgctttctaaatatgcagttgaatcttacatggatgatcaa 39387886  T
Q  480 tcaagtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttt 552  Q
    | ||||| | || ||||||||| |||||||||||||| |||||| ||||||||||  |||||||| |||||||    
T  39387885 ttaagtcgtaccattggtggaacaagtttgcagttggacacaagtgagaaaactggcggagttgaatcacttt 39387813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 39370254 - 39370451
Alignment:
Q  2 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 98  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  99 tgtttaaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtcaaactaatt 198  Q
    | | |||||| ||| ||||||||||||||||||||| | || | |||||| ||||||||||||| ||| | ||||||| ||||| |  ||||||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtcttggtcaatttaaaaagcttttccaatttacatatcacacccacaca--gtcaaactaatt 39370451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 260 - 353
Target Start/End: Original strand, 39216139 - 39216232
Alignment:
Q  260 attgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagttaa 353  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||| | |||||| ||||||||||||    
T  39216139 attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtttatcaatcgatgaaatctaacattgtctccggtgattcagttaa 39216232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 392 - 551
Target Start/End: Original strand, 39370818 - 39370979
Alignment:
Q  392 tcactatcatttactgatgtttctataaatatgaag-agcttaaatatctac-atctaaatatgcagttgcatcttacatgtatggtcaatcaagtcatg 489  Q
    ||||||||||||||  ||| |||||||||| ||| | ||||||| ||||||  |||||||||||||||||| ||||| ||| ||| ||||| ||||| |     
T  39370818 tcactatcatttaccaatgcttctataaatgtgaggcagcttaattatctattatctaaatatgcagttgcgtcttatatggatgatcaattaagtcgta 39370917  T
Q  490 cctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcactt 551  Q
     ||||||||||| |||||||||||||  || ||| ||||||||||||||| |||||||||||    
T  39370918 actttggtggaacaagtttgcagttgcacataagtgagaaaactgatggacttgagtcactt 39370979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 39162358 - 39162440
Alignment:
Q  270 acttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagtta 352  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  39162358 acttaatagtcctattagtgcaactattaatagtcttgtttattaatcaatgaaatctaacactttctaccttgattcagtta 39162440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 39206836 - 39206754
Alignment:
Q  270 acttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagtta 352  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  39206836 acttaatagtcctattagtgcaactattaatagtcttgtttattaatcaatgaaatctaacactttctaccttgattcagtta 39206754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 39161968 - 39162140
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtt 102  Q
    ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || ||    
T  39161968 ggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttt 39162067  T
Q  103 taaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 176  Q
    |||| |  |||||| ||||||||||||||||| | |||| | |||| |||||||||||||| |||| |||||||    
T  39162068 taaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaagcttttccagatttcatatcaca 39162140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 39207226 - 39207054
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtt 102  Q
    ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || ||    
T  39207226 ggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttt 39207127  T
Q  103 taaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 176  Q
    |||| |  |||||| ||||||||||||||||| | |||| | |||| |||||||||||||| |||| |||||||    
T  39207126 taaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaagcttttccagatttcatatcaca 39207054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 39389054 - 39388879
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca--atttttataacccgatctacatagttg 100  Q
    |||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |   |||||||| |  ||||||| || ||     
T  39389054 ggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaattc 39388955  T
Q  101 tttaaaaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 176  Q
      || |||  |||||||||||||||||||||||| |  ||| |||||| ||| |||||||||| |||| |||||||    
T  39388954 catagaaacgtttttaatcatgttaatgttgtatgtcatagtcaatttgaaatgcttttccagatttcatatcaca 39388879  T

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Target: chr2; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 258 - 345
Target Start/End: Complemental strand, 39192020 - 39191933
Alignment:
Q  258 acattgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgat 345  Q
    ||||| || ||||||||||||||| |||||||||||||||| | ||||| ||||||||||||| |||||| ||||||||| |||||||    
T  39192020 acattaaggggcacttaatagtcctattagtgcaactatttctcgtcttatttattaatcaattaaatctcacactttctacgttgat 39191933  T

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Target: chr2; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 39381407 - 39381276
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtt 102  Q
    ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  |||||||||| ||  |    
T  39381407 ggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataattcat 39381308  T
Q  103 taaaaatatttttaatcatgttaatgttgtat 134  Q
    ||||||||||||||||| ||||||||||||||    
T  39381307 taaaaatatttttaatcgtgttaatgttgtat 39381276  T

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Target: chr2; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39222967 - 39223037
Alignment:
Q  1 cgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatga 71  Q
    ||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||||||||    
T  39222967 cgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatgatgatga 39223037  T

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Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 331
Target Start/End: Complemental strand, 39388677 - 39388604
Alignment:
Q  258 acattgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaaca 331  Q
    |||||||| ||||||||||||||| || ||||| ||||||| |||||||| |||||||||||| || |||||||    
T  39388677 acattgaggggcacttaatagtcctatcagtgctactatttctagtcttgcttattaatcaatgaactctaaca 39388604  T

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Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 552
Target Start/End: Original strand, 39216353 - 39216520
Alignment:
Q  387 tattgtcactatcatttactgatgtttctataaatatgaa-gagcttaaatatctac-atctaaatatgcagttgcatcttacatgtatggtcaatcaag 484  Q
    |||||||| |||||||||| || | ||||||||||| ||  ||| |||||||||| | |||||||| ||||||||||||||  ||| ||  ||||| |||    
T  39216353 tattgtcattatcatttaccgacgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaag 39216452  T
Q  485 tcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttt 552  Q
    |||  ||  ||| | || |||||||||||||| |||||   |||||||||||| ||||| ||||||||    
T  39216453 tcacaccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcacttt 39216520  T

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Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 39370601 - 39370695
Alignment:
Q  258 acattgagaggcacttaatagtccaattagtgcaactatttttagtcttgtt-tattaatcaataaaatctaacactttctccgttgattcagtt 351  Q
    |||||||| ||||||||||| ||| ||||||||||||| || ||||||||||  |||||| ||| ||||||| |||| |||||  ||||||||||    
T  39370601 acattgaggggcacttaataatcctattagtgcaactacttctagtcttgttggattaatgaatgaaatctatcactctctcctgtgattcagtt 39370695  T

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Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 551
Target Start/End: Complemental strand, 39397080 - 39396972
Alignment:
Q  443 atctaaatatgcagttgcatcttacatgtatggtcaatcaagtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagtt 542  Q
    ||||||| ||||||||||||| |||||| |||  | || ||||| | || ||| ||||| |||||||||||||| ||  || || ||||| |||||||||    
T  39397080 atctaaacatgcagttgcatcctacatggatgaccgattaagtcctaccattgatggaacaagtttgcagttggacatgagtgataaaaccgatggagtt 39396981  T
Q  543 gagtcactt 551  Q
    |||||||||    
T  39396980 gagtcactt 39396972  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 39421728 - 39421688
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttca 43  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  39421728 ggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 39468453 - 39468485
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  39468453 ggtaaatgttcttattcatctagtttattgaaa 39468485  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 39197676 - 39197623
Alignment:
Q  283 attagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttc 336  Q
    |||||||||||||||| ||||||| || | |||||||| | |||||||||||||    
T  39197676 attagtgcaactatttctagtcttattcaataatcaattagatctaacactttc 39197623  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 39414310 - 39414266
Alignment:
Q  259 cattgagaggcacttaatagtccaattagtgcaactatttttagt 303  Q
    ||||||| ||||||||||||||| || ||||||||||||| ||||    
T  39414310 cattgaggggcacttaatagtcctatcagtgcaactatttatagt 39414266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 39473191 - 39473131
Alignment:
Q  427 gagcttaaatatctac-atctaaatatgcagttgcatcttacatgtatggtcaatcaagtc 486  Q
    |||||||||||||| | |||||||||||||| | ||||||||||| ||| ||||| |||||    
T  39473191 gagcttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaattaagtc 39473131  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 44895511 - 44895443
Alignment:
Q  443 atctaaatatgcagttgcatcttacatgtatggtcaatcaagtcatgcctttggtggaataagtttgca 511  Q
    |||||||||||||||| ||||| ||||| ||| ||||| ||| | | || ||||||||| |||||||||    
T  44895511 atctaaatatgcagttacatctaacatggatgatcaattaagccgtaccattggtggaacaagtttgca 44895443  T

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Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 384 - 580
Target Start/End: Original strand, 33561983 - 33562180
Alignment:
Q  384 tcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctac-atctaaatatgcagttgcatcttacatgtatggtcaatca 482  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  33561983 tcttactgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatca 33562082  T
Q  483 agtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaacggtgttttagttaatctgcaaga 580  Q
    |||| |||||||||| | | |||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||    
T  33562083 agtcgtgcctttggtagtacaagtttgcagttggacacaagtgagaaaactgatggagttgagtcactttacaatggtattttagctaatctgcaaga 33562180  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 33561140 - 33561348
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctacatagt 98  Q
    ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || ||||||| || |    
T  33561140 ggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctacttaat 33561239  T
Q  99 tgtttaaaaatatttttaatcatgttaatg-ttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtcaaactaat 197  Q
      |||||| | ||||||||||||||||||| |||||| | || | |||||| |||||||||| | | |||| ||||||| ||||| | | ||| ||||||    
T  33561240 cctttaaacacatttttaatcatgttaatgtttgtatgtcttggtcaatttgaaaagcttttactgatttcatatcacacccacagactttcagactaat 33561339  T
Q  198 ttggattat 206  Q
     ||||||||    
T  33561340 ctggattat 33561348  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  3 ggtaaatgttcttattcatctagtttattgaaagagtttca 43  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 552
Target Start/End: Original strand, 16114126 - 16114230
Alignment:
Q  448 aatatgcagttgcatcttacatgtatggtcaatcaagtcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtc 547  Q
    ||||||||||||||||||||||| ||| ||| | ||||||| |  ||||| ||| |||||||||||||  ||||||||||||||||||||  ||||||||    
T  16114126 aatatgcagttgcatcttacatggatgatcagttaagtcatacaattggtagaacaagtttgcagttgtacacaagcgagaaaactgatgacgttgagtc 16114225  T
Q  548 acttt 552  Q
    |||||    
T  16114226 acttt 16114230  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 45342187 - 45342343
Alignment:
Q  14 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 110  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  111 tttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagtttt 167  Q
    | |||||| |||||||||| |||||| |||| ||| || |||||||| |||||||||    
T  45342287 tgtttaatgatgttaatgtagtatatcttagtcaagttgaaaagcttgtccagtttt 45342343  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19807965 - 19808059
Alignment:
Q  1 cgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 95  Q
    |||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807965 cgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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