View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_11 (Length: 596)

Name: NF4381_low_11
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_11
NF4381_low_11
[»] scaffold0083 (2 HSPs)
scaffold0083 (18-445)||(50368-50795)
scaffold0083 (476-586)||(50805-50915)
[»] chr3 (47 HSPs)
chr3 (18-182)||(10434607-10434771)
chr3 (26-182)||(10364369-10364525)
chr3 (18-157)||(10579968-10580107)
chr3 (26-195)||(9838190-9838359)
chr3 (26-195)||(9849068-9849237)
chr3 (26-159)||(10376416-10376549)
chr3 (218-426)||(10076299-10076505)
chr3 (18-130)||(10195067-10195179)
chr3 (18-130)||(10088184-10088296)
chr3 (27-158)||(11768600-11768731)
chr3 (477-586)||(10214793-10214903)
chr3 (477-586)||(10223534-10223644)
chr3 (33-158)||(10076632-10076757)
chr3 (478-586)||(10103857-10103966)
chr3 (59-159)||(10505150-10505250)
chr3 (355-519)||(11768325-11768494)
chr3 (48-160)||(13170395-13170507)
chr3 (32-160)||(13289029-13289157)
chr3 (48-160)||(13332268-13332380)
chr3 (488-586)||(10123657-10123755)
chr3 (488-586)||(10180311-10180409)
chr3 (211-294)||(10376658-10376741)
chr3 (212-294)||(10364611-10364693)
chr3 (48-160)||(13160344-13160456)
chr3 (488-586)||(10256426-10256524)
chr3 (26-94)||(10084150-10084218)
chr3 (48-160)||(13343453-13343565)
chr3 (29-94)||(10191073-10191138)
chr3 (355-434)||(10031125-10031204)
chr3 (355-440)||(9838029-9838114)
chr3 (355-440)||(9848907-9848992)
chr3 (488-540)||(10028802-10028854)
chr3 (355-440)||(9837824-9837907)
chr3 (355-440)||(9848702-9848785)
chr3 (355-440)||(10126060-10126145)
chr3 (355-434)||(10657930-10658006)
chr3 (355-440)||(10662639-10662721)
chr3 (355-416)||(10104042-10104100)
chr3 (355-394)||(10214934-10214972)
chr3 (355-394)||(10223675-10223713)
chr3 (355-434)||(10516630-10516706)
chr3 (26-87)||(10888743-10888804)
chr3 (26-87)||(11131597-11131658)
chr3 (26-87)||(11149425-11149486)
chr3 (355-390)||(10123754-10123790)
chr3 (355-390)||(10256523-10256559)
chr3 (365-421)||(10259874-10259930)
[»] chr2 (2 HSPs)
chr2 (18-160)||(26906261-26906403)
chr2 (28-135)||(3438506-3438617)
[»] chr8 (1 HSPs)
chr8 (33-179)||(44958256-44958402)
[»] chr5 (4 HSPs)
chr5 (477-586)||(26793376-26793486)
chr5 (500-586)||(26818892-26818979)
chr5 (57-160)||(19956981-19957085)
chr5 (355-394)||(26793517-26793555)
[»] scaffold0002 (2 HSPs)
scaffold0002 (48-160)||(136481-136593)
scaffold0002 (48-160)||(146532-146644)


Alignment Details
Target: scaffold0083 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 50368 - 50795
Alignment:
Q  18 gttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  50368 gttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttg 50467  T
Q  118 cagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactagtatgaaattttgatggaaattacgagcaat 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50468 cagtgagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactagtatgaaattttgatggaaattacgagcaat 50567  T
Q  218 gactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgtatatagtaaaggtaaactcatgaagactt 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50568 gactcaaagaagactcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgcatatagtaaaggtaaactcatgaagactt 50667  T
Q  318 agctgtatgtgaattaatggttaacagtactgtatttaaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  50668 agctgtatgtgaattaatggttaacagtactgtatttaaagctggaaagcaaagctcagcagtggttaatattggacccacatcccacaaaataattgat 50767  T
Q  418 acaatgaaaaaggaaaaattgcagtcac 445  Q
    |||| |||||||||||||||||||||||    
T  50768 acaaagaaaaaggaaaaattgcagtcac 50795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 476 - 586
Target Start/End: Original strand, 50805 - 50915
Alignment:
Q  476 attatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaataaatgtatcatgttgtcatttttct 575  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  50805 attatatacatttttacttttggaaagtgattcaaatatgcaatttctagttaaactcctctcatatacgaaaataaatgtatcatgttgtcatttttct 50904  T
Q  576 tatcatctgtg 586  Q
    |||||||||||    
T  50905 tatcatctgtg 50915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 10434607 - 10434771
Alignment:
Q  18 gttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttg 117  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||| || ||||||||||    
T  10434607 gttttcagctgcctcaagagtgagtcattgagcttggtgtttttgatgtaatcacgaaactcttttgaagcaagtttctcaactaaggtttgaacagttg 10434706  T
Q  118 cagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaacca 182  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||||| |||||||    
T  10434707 cagagagaaaagctcctcctatcatagttgcagccatcttctaatgatattgttaaagcaaacca 10434771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 10364369 - 10364525
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagaga 125  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10364369 ctgcctcaagagtgagtcattgagtttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcagagaga 10364468  T
Q  126 aaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaacca 182  Q
    ||||||||||| ||||||| ||||||||||||||   |||||||||||| |||||||    
T  10364469 aaagctcctcctatcatagttgcagccatcttctgttgatattgttaaagcaaacca 10364525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 10580107 - 10579968
Alignment:
Q  18 gttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttg 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  10580107 gttttaagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactcagttgaagcaagtttctcaactaaggtctgaacagttg 10580008  T
Q  118 cagagagaaaagctcctccaatcatagctgcagccatctt 157  Q
    ||||||| ||||| ||||||||||||| ||||||||||||    
T  10580007 cagagaggaaagcacctccaatcatagttgcagccatctt 10579968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 9838359 - 9838190
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagaga 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  9838359 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagagaga 9838260  T
Q  126 aaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactagtatgaaat 195  Q
    ||||| ||||||||||||| ||||||||||||||   ||| |||| ||| |||| ||  |||||||||||    
T  9838259 aaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtagtatgaaat 9838190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 9849237 - 9849068
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagaga 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  9849237 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagagaga 9849138  T
Q  126 aaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactagtatgaaat 195  Q
    ||||| ||||||||||||| ||||||||||||||   ||| |||| ||| |||| ||  |||||||||||    
T  9849137 aaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtagtatgaaat 9849068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 10376416 - 10376549
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagaga 125  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10376416 ctgcctcaagagtgagacattgagtttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcagagaga 10376515  T
Q  126 aaagctcctccaatcatagctgcagccatcttct 159  Q
    ||||| ||||| ||||||| ||||||||||||||    
T  10376516 aaagcacctcctatcatagttgcagccatcttct 10376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 218 - 426
Target Start/End: Complemental strand, 10076505 - 10076299
Alignment:
Q  218 gactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgtatatagtaaa-ggtaaactcatgaagact 316  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||| ||||| |||| ||||| |||||||    
T  10076505 gactcaaagaagactcgcttgtgaatgaatggataacactaacagcgctgtttttgagtggttggaagtgcatattgtaaagggtagactcaagaagact 10076406  T
Q  317 tagctgtatgtgaattaatggttaacagtactgtattt-aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattg 415  Q
    ||  ||||||||||||||||   ||    ||   |||| |||||||||||| ||||||||| |||||||||||||||||| |||||  ||||||||||||    
T  10076405 tatatgtatgtgaattaatgaagaa----acaaaatttgaaagctggaaagtaaagctcagtagtggttaatattggacccacatcccacaaaataattg 10076310  T
Q  416 atacaatgaaa 426  Q
    |||||| ||||    
T  10076309 atacaaggaaa 10076299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 10195179 - 10195067
Alignment:
Q  18 gttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttg 117  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| || || ||||||| |||||    
T  10195179 gttttcagctgcctcaagagtgagacattcaacttggtgtttttgatgtaatcacgaaactctgttgaagcaagtttctcaaccaaggtctgaatagttg 10195080  T
Q  118 cagagagaaaagc 130  Q
    |||||||||||||    
T  10195079 cagagagaaaagc 10195067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 10088296 - 10088184
Alignment:
Q  18 gttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttg 117  Q
    ||||||||||||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| || || ||||||| |||||    
T  10088296 gttttcagctgcctcgagagtgagacattcaacttggtgtttttgatgtaatcacgaaactctgttgaagcaagtttctcaaccaaggtctgaatagttg 10088197  T
Q  118 cagagagaaaagc 130  Q
    |||||||||||||    
T  10088196 cagagagaaaagc 10088184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 11768731 - 11768600
Alignment:
Q  27 tgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaa 126  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |  || || || | |||||| |||||||    
T  11768731 tgcctcaagagtgagacattcagcttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaaacaaggtttgcatagttgccgagagaa 11768632  T
Q  127 aagctcctccaatcatagctgcagccatcttc 158  Q
    |||| ||||| ||||||| ||| |||||||||    
T  11768631 aagcgcctcctatcatagttgccgccatcttc 11768600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 477 - 586
Target Start/End: Complemental strand, 10214903 - 10214793
Alignment:
Q  477 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttct 575  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  10214903 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 10214804  T
Q  576 tatcatctgtg 586  Q
    ||||| |||||    
T  10214803 tatcacctgtg 10214793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 477 - 586
Target Start/End: Complemental strand, 10223644 - 10223534
Alignment:
Q  477 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttct 575  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  10223644 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 10223545  T
Q  576 tatcatctgtg 586  Q
    ||||| |||||    
T  10223544 tatcacctgtg 10223534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 10076757 - 10076632
Alignment:
Q  33 aagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctc 132  Q
    |||||||| ||||| || || |||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||  ||||||||| |    
T  10076757 aagagtgatacattcagatttgtgtttttgatgtaatcaagaaactcagttgaagtaagtttctcaactaaggtctgaacagttgcatggagaaaagcac 10076658  T
Q  133 ctccaatcatagctgcagccatcttc 158  Q
    |||| ||||||| |||||||||||||    
T  10076657 ctcctatcatagttgcagccatcttc 10076632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 478 - 586
Target Start/End: Complemental strand, 10103966 - 10103857
Alignment:
Q  478 tatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttctt 576  Q
    |||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||    
T  10103966 tatatacatttttactttaggaaagtgagtcaaatatgcaatttctagttaaattcctctcatatactaaaaataaatgtatcatattgtcatttttctt 10103867  T
Q  577 atcatctgtg 586  Q
    |||| |||||    
T  10103866 atcacctgtg 10103857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 10505250 - 10505150
Alignment:
Q  59 tttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttc 158  Q
    ||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  10505250 tttgatgtaatcacgaaactctgttgaagcaagtttgtcaactaaggtctgaacagttgcagagagaaaagttcctcctatcatagttgcagccatcttc 10505151  T
Q  159 t 159  Q
    |    
T  10505150 t 10505150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 355 - 519
Target Start/End: Complemental strand, 11768494 - 11768325
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca---gtcactaaaac 451  Q
    ||||| ||||||||||| ||| || |||||||||||||||| |||||  |||||||||||||||||| |||||||||||| |||||    | | ||||      
T  11768494 aaagcgggaaagcaaagttcaccattggttaatattggacctacatcccacaaaataattgatacaaagaaaaaggaaaagttgcacacttaattaaagg 11768395  T
Q  452 catcggaatc-ttaaatagcatata-attatatatatttttacttttggtaagtgattcaaatatgcaat 519  Q
    ||||| |||| |||||||||| |||  ||||||| |||||||||||||| ||||||||||||||||||||    
T  11768394 catcgaaatctttaaatagcagatactttatatacatttttacttttggaaagtgattcaaatatgcaat 11768325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 13170507 - 13170395
Alignment:
Q  48 agcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctg 147  Q
    ||||| |||||| |||||||||||  |||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || ||    
T  13170507 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttg 13170408  T
Q  148 cagccatcttcta 160  Q
    |||||||||||||    
T  13170407 cagccatcttcta 13170395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 13289157 - 13289029
Alignment:
Q  32 caagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagct 131  Q
    ||||||||||  ||| |||||  ||||| |||||||||||  |||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  13289157 caagagtgaggaattcagcttgttgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagct 13289058  T
Q  132 cctccaatcatagctgcagccatcttcta 160  Q
    ||||| | || || ||||||||| |||||    
T  13289057 cctcccaccaaagttgcagccattttcta 13289029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 13332380 - 13332268
Alignment:
Q  48 agcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctg 147  Q
    ||||| |||||| |||||||||||  |||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || ||    
T  13332380 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttg 13332281  T
Q  148 cagccatcttcta 160  Q
    |||||||||||||    
T  13332280 cagccatcttcta 13332268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 488 - 586
Target Start/End: Complemental strand, 10123755 - 10123657
Alignment:
Q  488 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 586  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||| |||||    
T  10123755 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaatgtagcat-atgtcatttttcttatcacctgtg 10123657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 488 - 586
Target Start/End: Complemental strand, 10180409 - 10180311
Alignment:
Q  488 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 586  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||| |||||    
T  10180409 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaatgtagcat-atgtcatttttcttatcacctgtg 10180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 10376658 - 10376741
Alignment:
Q  211 gagcaatgactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgtatatag 294  Q
    |||||| ||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  10376658 gagcaaagactcaaagaagactcgcttgtgagtgaatggataacactaacagtgctgtttttgaatggttggaagtgcatatag 10376741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 10364611 - 10364693
Alignment:
Q  212 agcaatgactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgtatatag 294  Q
    ||||| ||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  10364611 agcaaagactcaaagaagacttgcttgtgaatgaatggataacactaacagtgctgtttttgaatggttggaagtgcatatag 10364693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 13160456 - 13160344
Alignment:
Q  48 agcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctg 147  Q
    ||||| |||||| |||||||||||  |||||||  ||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| | || || ||    
T  13160456 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttg 13160357  T
Q  148 cagccatcttcta 160  Q
    |||||||||||||    
T  13160356 cagccatcttcta 13160344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 488 - 586
Target Start/End: Complemental strand, 10256524 - 10256426
Alignment:
Q  488 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 586  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||  ||||||||||||||||| |||||    
T  10256524 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaacgtagcat-atgtcatttttcttatcacctgtg 10256426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 10084218 - 10084150
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagttt 94  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||    
T  10084218 ctgcctcaagagtgagacatttggcttggtgtttttgatgtaatcaagaaaatctgttgaagcaagttt 10084150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 13343565 - 13343453
Alignment:
Q  48 agcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctg 147  Q
    ||||| |||||| | |||||||||  |||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || ||    
T  13343565 agcttggtgtttcttatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttg 13343466  T
Q  148 cagccatcttcta 160  Q
    ||||||| |||||    
T  13343465 cagccattttcta 13343453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 10191138 - 10191073
Alignment:
Q  29 cctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagttt 94  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||    
T  10191138 cctcaagagtgagacatttggcttggtgtttttgatgtaatcaagaaaatctgttgaagcaagttt 10191073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 10031204 - 10031125
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 434  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||   ||||||||||||||||| ||||||| ||||    
T  10031204 aaagctggaaagcaaagctcatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaa 10031125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 9838114 - 9838029
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 440  Q
    ||||||||||||||||||| | || || ||||||||||||| |||||   ||||||||||||||||| ||||||| |||| |||||    
T  9838114 aaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttgca 9838029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 9848992 - 9848907
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 440  Q
    ||||||||||||||||||| | || || ||||||||||||| |||||   ||||||||||||||||| ||||||| |||| |||||    
T  9848992 aaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttgca 9848907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 10028854 - 10028802
Alignment:
Q  488 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcat 540  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  10028854 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcat 10028802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 9837907 - 9837824
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 440  Q
    |||||||||||||||||||   || || ||||||||||||| |||||  |||||||||||||| ||| |||||||||||| |||||    
T  9837907 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgca 9837824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 9848785 - 9848702
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 440  Q
    |||||||||||||||||||   || || ||||||||||||| |||||  |||||||||||||| ||| |||||||||||| |||||    
T  9848785 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgca 9848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 10126145 - 10126060
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 440  Q
    ||||||||||||||||| ||| || || ||||||||||||| |||||   ||||||||||||||||| | ||||| |||| |||||    
T  10126145 aaagctggaaagcaaaggtcatcattgtttaatattggacccacatccctcaaaataattgatacaaagcaaaagaaaaagttgca 10126060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 10658006 - 10657930
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 434  Q
    ||||||||||||||||| ||| ||||| |||||   ||||| ||||| | ||||||||||||||||| ||||||||||||    
T  10658006 aaagctggaaagcaaaggtcatcagtgattaat---ggacccacatccttcaaaataattgatacaaagaaaaaggaaaa 10657930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 10662721 - 10662639
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 440  Q
    ||||||||||||||||| ||| ||||| |||||   ||||| ||||| | |||||||||| |||||| |||||||||||| |||||    
T  10662721 aaagctggaaagcaaagttcatcagtgattaat---ggacccacatccttcaaaataattaatacaaagaaaaaggaaaagttgca 10662639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 10104100 - 10104042
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattga 416  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||  |||||||||||||    
T  10104100 aaagctggaaagcaaagctcagcagt-gttaatattggac--acatcccacaaaataattga 10104042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 10214972 - 10214934
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggac 394  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  10214972 aaagctggaaagcaaagctcagcagt-gttaatattggac 10214934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 10223713 - 10223675
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggac 394  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  10223713 aaagctggaaagcaaagctcagcagt-gttaatattggac 10223675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 10516706 - 10516630
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 434  Q
    |||||||||||||| || ||| ||||| ||| |   ||||| ||||| | ||||||||||||||||| ||||||||||||    
T  10516706 aaagctggaaagcataggtcatcagtgattact---ggacccacatccttcaaaataattgatacaaagaaaaaggaaaa 10516630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 10888804 - 10888743
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaag 87  Q
    |||| |||||||||||||||| |||||  |||| |||||| ||||| ||||||| |||||||    
T  10888804 ctgcttcaagagtgagacattcagctttttgttgttgatgaaatcacgaaactcagttgaag 10888743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 11131597 - 11131658
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaag 87  Q
    |||| |||||||||||||||| |||||  |||| |||||| ||||| ||||||| |||||||    
T  11131597 ctgcttcaagagtgagacattcagctttttgttgttgatgaaatcacgaaactcagttgaag 11131658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 11149425 - 11149486
Alignment:
Q  26 ctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaag 87  Q
    |||| |||||||||||||||| |||||  |||| |||||| ||||| ||||||| |||||||    
T  11149425 ctgcttcaagagtgagacattcagctttttgttgttgatgaaatcacgaaactcagttgaag 11149486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 10123790 - 10123754
Alignment:
Q  355 aaagctggaaagcaaa-gctcagcagtggttaatatt 390  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10123790 aaagctggaaagcaaaagctcagcagtggttaatatt 10123754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 10256559 - 10256523
Alignment:
Q  355 aaagctggaaagcaaa-gctcagcagtggttaatatt 390  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10256559 aaagctggaaagcaaaagctcagcagtggttaatatt 10256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 10259930 - 10259874
Alignment:
Q  365 agcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaa 421  Q
    ||||||| ||| || || ||||||||||||| ||||| | |||||||||||||||||    
T  10259930 agcaaaggtcatcattgtttaatattggacccacatccttcaaaataattgatacaa 10259874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 26906403 - 26906261
Alignment:
Q  18 gttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttg 117  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| |||    
T  26906403 gtttttagctgcctcaagagtgagacattgagcttggtgtttttgatgtaatcaagaaactgtgttgaaacaagtttctcaactaaagtctgaacaattg 26906304  T
Q  118 cagagagaaaagctcctccaatcatagctgcagccatcttcta 160  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  26906303 cagagagaaaagcttctcctatcatagctgcagccatcttcta 26906261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 3438506 - 3438617
Alignment:
Q  28 gcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaa----gtctgaacagttgcagaga 123  Q
    ||||||| ||||||| ||| | ||| || |||||||||||||||||||| || | ||||||||||||||| |||||     ||||||| | ||||| |||    
T  3438506 gcctcaaaagtgagatatttaacttggtatttttgatgtaatcaagaaaatccgatgaagcaagtttctcaactaattaaggtctgaaaaattgcataga 3438605  T
Q  124 gaaaagctcctc 135  Q
    ||||||||||||    
T  3438606 gaaaagctcctc 3438617  T

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Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 44958256 - 44958402
Alignment:
Q  33 aagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctc 132  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||    
T  44958256 aagagtgagacattgatcttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtttgaacagttgcagatagaaaagctc 44958355  T
Q  133 ctccaatcatagctgcagccatcttctagggatattgttaaaacaaa 179  Q
    |||| ||||||| |||||||||||||||| | |||||||||| ||||    
T  44958356 ctcctatcatagttgcagccatcttctagtgttattgttaaagcaaa 44958402  T

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Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 477 - 586
Target Start/End: Complemental strand, 26793486 - 26793376
Alignment:
Q  477 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttct 575  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  26793486 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 26793387  T
Q  576 tatcatctgtg 586  Q
    ||||| |||||    
T  26793386 tatcacctgtg 26793376  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 500 - 586
Target Start/End: Complemental strand, 26818979 - 26818892
Alignment:
Q  500 aagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 586  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  26818979 aagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttcttatcacctgtg 26818892  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 19957085 - 19956981
Alignment:
Q  57 tttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacag-ttgcagagagaaaagctcctccaatcatagctgcagccatc 155  Q
    ||||| ||||||| || ||| || || |||||||||||||| ||||| || |||| || |||| ||||||||||||||||| ||||||| |||| |||||    
T  19957085 ttttttatgtaataaaaaaattccgtggaagcaagtttctcaactaaggtttgaataggttgctgagagaaaagctcctcctatcatagttgcaaccatc 19956986  T
Q  156 ttcta 160  Q
    |||||    
T  19956985 ttcta 19956981  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 26793555 - 26793517
Alignment:
Q  355 aaagctggaaagcaaagctcagcagtggttaatattggac 394  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  26793555 aaagctggaaagcaaagctcagcagt-gttaatattggac 26793517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 136481 - 136593
Alignment:
Q  48 agcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctg 147  Q
    ||||| |||||| |||||||||||  |||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || ||    
T  136481 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttg 136580  T
Q  148 cagccatcttcta 160  Q
    |||||||||||||    
T  136581 cagccatcttcta 136593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 146532 - 146644
Alignment:
Q  48 agcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctg 147  Q
    ||||| |||||| |||||||||||  |||||||  ||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| | || || ||    
T  146532 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttg 146631  T
Q  148 cagccatcttcta 160  Q
    |||||||||||||    
T  146632 cagccatcttcta 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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