View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_12 (Length: 592)
Name: NF4381_low_12
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_12 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 30098902 - 30099493
Alignment:
| Q |
1 |
tcatcaactgttgcaggtaactannnnnnnngtggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagt |
100 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098902 |
tcatcaactgttgcaggtaactattttttttgttgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagt |
30099001 |
T |
|
| Q |
101 |
actcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaaggaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30099002 |
actcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaaggaat |
30099101 |
T |
|
| Q |
201 |
agcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099102 |
agcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagct |
30099201 |
T |
|
| Q |
301 |
attaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagcttcatttgcagctatggaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099202 |
attaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagcttcatttgcagctatggaaa |
30099301 |
T |
|
| Q |
401 |
aagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatcccatggctccttactgcagctgcaggaacaat |
500 |
Q |
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| T |
30099302 |
aagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatcccatggctccttactgcagctgcaggaacaat |
30099401 |
T |
|
| Q |
501 |
agatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaatgctatagttgaaaatgttc |
592 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099402 |
agatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaatgctatagttgaaaatgttc |
30099493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 97 - 573
Target Start/End: Complemental strand, 30091914 - 30091439
Alignment:
| Q |
97 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
196 |
Q |
| |
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|||||||| ||| || |||| ||||||| |||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
|
| Q |
197 |
gaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggacca |
296 |
Q |
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|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |
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| T |
30091815 |
gagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaagagggtcttttggcttctgatgttttagctggaatggacca |
30091716 |
T |
|
| Q |
297 |
agctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagcttcatttgcagctatg |
396 |
Q |
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||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
30091715 |
agctattgctgatggtgttgatgtgatttcaatttctatgggatttgatggtgttccactttatgaagatgctatagcaatagcttcttttgcagctatg |
30091616 |
T |
|
| Q |
397 |
gaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatcccatggctccttactgcagctgcaggaa |
496 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||||||||| ||| | ||||||| ||||||||||| |
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| T |
30091615 |
gagaaagggattgttgtttcgtcttctgcaggtaactcaggacctaagcatggaactttgcacaatggtatcccttgggttcttactgtagctgcaggaa |
30091516 |
T |
|
| Q |
497 |
caatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaat |
573 |
Q |
| |
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| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| || ||||| |
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| T |
30091515 |
ccatagatagaacttttggcagccttgttttggggaatggtcaaaacattattggttggactttgtttgcatcaaat |
30091439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 153 - 555
Target Start/End: Complemental strand, 30087879 - 30087477
Alignment:
| Q |
153 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
252 |
Q |
| |
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|||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
|
| Q |
253 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttc |
352 |
Q |
| |
|
||||||| | | | || ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||||| || ||| |||||| | ||| |
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| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatggtattc |
30087680 |
T |
|
| Q |
353 |
cactttatgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaac |
452 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||| |
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| T |
30087679 |
cactttatgaagatgctatagcaatagcttcttttacagctatggagaaagggattgttgtttcatcttctgcaggtaactcaggacctaagcatggaac |
30087580 |
T |
|
| Q |
453 |
cttgcacaatggtatcccatggctccttactgcagctgcaggaacaatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggt |
552 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||| ||| |||||||||| |
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| T |
30087579 |
cttgcacaatggtatcccttgggtccttactgtagctgcaggaaccacagatagaacttttggcagccttgttttgggaaatggtgaaaacattattggt |
30087480 |
T |
|
| Q |
553 |
tgg |
555 |
Q |
| |
|
||| |
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| T |
30087479 |
tgg |
30087477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 181 - 425
Target Start/End: Complemental strand, 35171551 - 35171307
Alignment:
| Q |
181 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
280 |
Q |
| |
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||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || ||||||||| |
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| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
|
| Q |
281 |
tagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatcctatagcaatagc |
380 |
Q |
| |
|
| || || ||||| ||||||||| | || ||||||||| || ||||| ||| | || ||| || ||||||||||||||||||||| | |||||||| |
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| T |
35171451 |
ttgcaggaatggatcaagctattgatgataatgttgatgttatctcaatctcattaggttttaatagtgttccactttatgaagatccagttgcaatagc |
35171352 |
T |
|
| Q |
381 |
ttcatttgcagctatggaaaaagggattgttgtttcatcttctgc |
425 |
Q |
| |
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|||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
35171351 |
ttcatttgcagcaatggaaaaaaatgtggttgtttcatcttctgc |
35171307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 8946639 - 8946567
Alignment:
| Q |
359 |
atgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaa |
431 |
Q |
| |
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|||||||||| || |||||||| || |||||||||||||||||||| ||| |||| || | ||| |||||||| |
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| T |
8946639 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
8946567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 21687763 - 21687715
Alignment:
| Q |
383 |
catttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaa |
431 |
Q |
| |
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|||||||||||||||||||||| ||| |||| || ||||||||||||| |
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| T |
21687763 |
catttgcagctatggaaaaaggtatttttgtgtctacttctgcaggtaa |
21687715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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