View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_13 (Length: 550)

Name: NF4381_low_13
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_13
NF4381_low_13
[»] chr5 (11 HSPs)
chr5 (60-543)||(42690064-42690549)
chr5 (396-543)||(23946507-23946654)
chr5 (411-543)||(16781272-16781404)
chr5 (35-73)||(42690564-42690602)
chr5 (68-126)||(7826054-7826112)
chr5 (77-141)||(40266419-40266483)
chr5 (60-107)||(28704076-28704123)
chr5 (60-105)||(28678084-28678129)
chr5 (60-100)||(6158165-6158205)
chr5 (114-178)||(18673611-18673675)
chr5 (150-194)||(43182181-43182225)
[»] chr8 (4 HSPs)
chr8 (396-543)||(45211096-45211243)
chr8 (114-181)||(1349055-1349122)
chr8 (59-125)||(27235325-27235391)
chr8 (59-124)||(3588405-3588470)
[»] chr4 (2 HSPs)
chr4 (396-539)||(33805707-33805850)
chr4 (60-105)||(55527748-55527793)
[»] chr3 (4 HSPs)
chr3 (396-543)||(37145388-37145535)
chr3 (412-543)||(53606574-53606705)
chr3 (114-176)||(8150310-8150372)
chr3 (150-191)||(8150167-8150208)
[»] chr1 (5 HSPs)
chr1 (396-543)||(721271-721418)
chr1 (396-543)||(38880495-38880642)
chr1 (56-163)||(10884370-10884477)
chr1 (77-189)||(5602944-5603056)
chr1 (60-105)||(33401595-33401640)
[»] chr6 (2 HSPs)
chr6 (59-189)||(26498182-26498312)
chr6 (144-178)||(34131817-34131851)
[»] chr2 (2 HSPs)
chr2 (86-189)||(28360157-28360260)
chr2 (58-100)||(8241819-8241861)
[»] chr7 (4 HSPs)
chr7 (412-543)||(46831169-46831300)
chr7 (424-531)||(48953283-48953390)
chr7 (116-180)||(24856980-24857044)
chr7 (61-100)||(8460227-8460266)
[»] scaffold0005 (1 HSPs)
scaffold0005 (114-180)||(269118-269184)
[»] scaffold0457 (2 HSPs)
scaffold0457 (132-180)||(5912-5960)
scaffold0457 (145-189)||(6000-6044)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 60 - 543
Target Start/End: Complemental strand, 42690549 - 42690064
Alignment:
Q  60 cgtgagttaactcatgctgagatttgcactagcgtgagttatctcatgctgtgagagttaactcacgtaggagcattttggttttttcacttgggaatga 159  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  42690549 cgtgagttaactcatgccgagatttgcactagcgtgagttatctcatgctgtgagagttaactcacgtaggggcattttagttttttcacttgggaatga 42690450  T
Q  160 gcaaaaatgtttgggtaaagaacataattccatttcttttatcaatgcttaaatgagttttctttctcgcaaaaattttatcctacactccatcaattat 259  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42690449 gcaaaaacgtttgggtaaagaacataattccatttcttttatcaatacttaaatgagttttctttctcgcaaaatttttatcctacactccatcaattat 42690350  T
Q  260 accctcaactgtatatttatttgacatatccattttgccctcatatataaatttaaattcttca--nnnnnnnncatcagattattttccaaaggttttc 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          ||||||||||||||||||||||||||    
T  42690349 accctcaactgtatatttatttgacatatccattttgccctcatatataaatttaaatccttcattttttttttcatcagattattttccaaaggttttc 42690250  T
Q  358 agcagacaaagagagaacaagagagtaattgttgcatgaaatgtgaatcattttgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattc 457  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  42690249 agcagacaaagagagaacgagagagtaattgttgcatgaaatgtgaatcattctgaccgtttcgtgaaatgcaacaacagaaatcaccatgaccacattc 42690150  T
Q  458 ttaatgttgatggcagctgcttaggcactccctcacgcaccggttacggtggtattctccgtaatagtgcaggcttgttcatctca 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42690149 ttaatgttgatggcagctgcttaggcactccctcacgcaccggttacggtggtattctccgtaatagtgcaggcttgttcatctca 42690064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 396 - 543
Target Start/End: Original strand, 23946507 - 23946654
Alignment:
Q  396 aaatgtgaatcattttgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgc 495  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  23946507 aaatgtgaaccattctgaccgtttcgtgaaatggaacaacagaaatcaccatgaccatattcttaatgtggatggcagctgcttaggtactccctcacgc 23946606  T
Q  496 accggttacggtggtattctccgtaatagtgcaggcttgttcatctca 543  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23946607 accagttacggtggtattctccgtaatagtgcaggcttgttcatctca 23946654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 543
Target Start/End: Original strand, 16781272 - 16781404
Alignment:
Q  411 tgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgcaccggttacggtggt 510  Q
    |||||| || ||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||| | || ||||| || ||  | ||||| ||||||    
T  16781272 tgaccgctttgtgaaatggaacagcagaaatcacaaagacaacattctcaatgttgatggcagctgcattggaactccttcccgagctggttatggtggt 16781371  T
Q  511 attctccgtaatagtgcaggcttgttcatctca 543  Q
     | ||||| || ||  |||| ||||||||||||    
T  16781372 gtcctccgcaacagcacaggtttgttcatctca 16781404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 42690602 - 42690564
Alignment:
Q  35 gacaaatggaccatttatatttttgcgtgagttaactca 73  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42690602 gacaaatggaccatttatatttttgcgtgagttaactca 42690564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 7826112 - 7826054
Alignment:
Q  68 aactcatgctgagatttgcactagcgtgagttatctcatgctgtgagagttaactcacg 126  Q
    ||||||||| ||||||| ||||||||||||||| |||||| || | |||||||||||||    
T  7826112 aactcatgcggagatttacactagcgtgagttaactcatgttgcgggagttaactcacg 7826054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 40266483 - 40266419
Alignment:
Q  77 tgagatttgcactagcgtgagttatctcatgctgtgagagttaactcacgtaggagcattttggt 141  Q
    |||| ||||||| ||||||||||| ||||||||| | ||||||||||||| | | ||||||||||    
T  40266483 tgaggtttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggt 40266419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 28704076 - 28704123
Alignment:
Q  60 cgtgagttaactcatgctgagatttgcactagcgtgagttatctcatg 107  Q
    |||||||||||||| | ||| |||||||||||||||||||| ||||||    
T  28704076 cgtgagttaactcacgttgacatttgcactagcgtgagttaactcatg 28704123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 28678084 - 28678129
Alignment:
Q  60 cgtgagttaactcatgctgagatttgcactagcgtgagttatctca 105  Q
    |||||||||||||| | ||| |||||||||||||||||||| ||||    
T  28678084 cgtgagttaactcacgttgacatttgcactagcgtgagttaactca 28678129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 6158205 - 6158165
Alignment:
Q  60 cgtgagttaactcatgctgagatttgcactagcgtgagtta 100  Q
    ||||||||||||||||  ||||||| |||||||||||||||    
T  6158205 cgtgagttaactcatgtagagatttacactagcgtgagtta 6158165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 18673611 - 18673675
Alignment:
Q  114 gagttaactcacgtaggagcattttggttttttcacttgggaatgagcaaaaatgtttgggtaaa 178  Q
    ||||||||||||| ||| | ||||| || |||| | |||||||||||||||||  ||||||||||    
T  18673611 gagttaactcacgcaggggtatttttgtctttttatttgggaatgagcaaaaacttttgggtaaa 18673675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 43182225 - 43182181
Alignment:
Q  150 ttgggaatgagcaaaaatgtttgggtaaagaacataattccattt 194  Q
    |||||||||||||||| |||||||||||||| || ||||| ||||    
T  43182225 ttgggaatgagcaaaattgtttgggtaaagagcagaattctattt 43182181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 396 - 543
Target Start/End: Complemental strand, 45211243 - 45211096
Alignment:
Q  396 aaatgtgaatcattttgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgc 495  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  45211243 aaatgtgaaccattctgaccgtttcgtgaaatggaacaacagaaatcaccatgaccatattcttaatgtggatggcagctgcttaggcactccctcacgc 45211144  T
Q  496 accggttacggtggtattctccgtaatagtgcaggcttgttcatctca 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45211143 accggttacggtggtattctccgtaatagtgcaggcttgttcatctca 45211096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 1349122 - 1349055
Alignment:
Q  114 gagttaactcacgtaggagcattttggttttttcacttgggaatgagcaaaaatgtttgggtaaagaa 181  Q
    ||||||||||||| |||  |||||||||  |||||||||||||||||||||||  |||||||||||||    
T  1349122 gagttaactcacgcagggacattttggtcatttcacttgggaatgagcaaaaacttttgggtaaagaa 1349055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 27235391 - 27235325
Alignment:
Q  59 gcgtgagttaactcatgctgagatttgcactagcgtgagttatctcatgctgtgagagttaactcac 125  Q
    ||||||||||||||| |||||||||| ||||| ||||||||| | ||||||| | ||||||||||||    
T  27235391 gcgtgagttaactcacgctgagatttacactaccgtgagttaacacatgctgcgggagttaactcac 27235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 3588470 - 3588405
Alignment:
Q  59 gcgtgagttaactcatgctgagatttgcactagcgtgagttatctcatgctgtgagagttaactca 124  Q
    ||||| |||||||||  |||||||||||||||||| |||||| ||||||||  | |||||||||||    
T  3588470 gcgtgggttaactcacactgagatttgcactagcgggagttaactcatgctacgggagttaactca 3588405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 396 - 539
Target Start/End: Original strand, 33805707 - 33805850
Alignment:
Q  396 aaatgtgaatcattttgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgc 495  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  33805707 aaatgtgaaccattctgaccgtttcgtgaaatggaacaacagaaatcaccatgaccatattcttaatgtggatggcagctgcttaggcactccctcacgc 33805806  T
Q  496 accggttacggtggtattctccgtaatagtgcaggcttgttcat 539  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  33805807 accggttacggtggtattctccgcaatagtgcaggcttgttcat 33805850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 55527793 - 55527748
Alignment:
Q  60 cgtgagttaactcatgctgagatttgcactagcgtgagttatctca 105  Q
    |||||||||||||||| ||  |||||||||||||||||||| ||||    
T  55527793 cgtgagttaactcatgttgccatttgcactagcgtgagttaactca 55527748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 396 - 543
Target Start/End: Original strand, 37145388 - 37145535
Alignment:
Q  396 aaatgtgaatcattttgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgc 495  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  37145388 aaatgtgaaccattctgaccgtttcgtgaaatggaacaacaggaatcaccatgaccatattcttaatgtggatggcagctgcttaggcactccctcacgc 37145487  T
Q  496 accggttacggtggtattctccgtaatagtgcaggcttgttcatctca 543  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  37145488 accggttacggtgatattctccgtaatagtgcaggcttgctcatctca 37145535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 543
Target Start/End: Complemental strand, 53606705 - 53606574
Alignment:
Q  412 gaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgcaccggttacggtggta 511  Q
    ||||| || |||||||||||||| ||||| ||||| ||   ||||||||||||||||||||||||| | || || ||  ||||||||||||||||||||     
T  53606705 gaccgattggtgaaatggaacaatagaaaccaccaagatttcattcttaatgttgatggcagctgcattggaacccctccacgcaccggttacggtggtg 53606606  T
Q  512 ttctccgtaatagtgcaggcttgttcatctca 543  Q
    | || || ||||||||||| ||||| ||||||    
T  53606605 tcctacgcaatagtgcaggtttgtttatctca 53606574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 8150310 - 8150372
Alignment:
Q  114 gagttaactcacgtaggagcattttggttttttcacttgggaatgagcaaaaatgtttgggta 176  Q
    ||||||||||||| ||| |||||||||  ||||||||||| ||||||||||||  ||||||||    
T  8150310 gagttaactcacgcaggggcattttggccttttcacttggaaatgagcaaaaacatttgggta 8150372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 8150208 - 8150167
Alignment:
Q  150 ttgggaatgagcaaaaatgtttgggtaaagaacataattcca 191  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  8150208 ttgggaatgagcaaaaacgtttgggtaaagatcataattcca 8150167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 396 - 543
Target Start/End: Original strand, 721271 - 721418
Alignment:
Q  396 aaatgtgaatcattttgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgc 495  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||    
T  721271 aaatgtgaatcattatgaccgtttcgtgaaatggaacaacagaaatcaccttgactacattcttaatgttgatggcagctgcttaggcactccttcccgc 721370  T
Q  496 accggttacggtggtattctccgtaatagtgcaggcttgttcatctca 543  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||    
T  721371 actggttacagtggtattctccgtaatagtgcaggcttgttcatctca 721418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 396 - 543
Target Start/End: Original strand, 38880495 - 38880642
Alignment:
Q  396 aaatgtgaatcattttgaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgc 495  Q
    |||||||||||||| ||||||||| |||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||||| ||||| || |||    
T  38880495 aaatgtgaatcattctgaccgttttgtgaaatggaacaacaaaaatcacattgactacattcttaatgttgatggcagctgcttaggtactccttcccgc 38880594  T
Q  496 accggttacggtggtattctccgtaatagtgcaggcttgttcatctca 543  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  38880595 actggttacggtggtattctccgtaatagtgcaggcttgttcatctca 38880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 10884477 - 10884370
Alignment:
Q  56 tttgcgtgagttaactcatgctgagatttgcactagcgtgagttatctcatgctgtgagagttaactcacgtaggagcattttggttttttcacttggga 155  Q
    |||||||||||||||||| || ||||||| |||||| |||||||| |||||| || | ||||||||||||| ||| ||||||||||  |||||||||| |    
T  10884477 tttgcgtgagttaactcacgcagagatttacactagagtgagttaactcatgttgcgggagttaactcacgcaggggcattttggtcatttcacttggaa 10884378  T
Q  156 atgagcaa 163  Q
    ||||||||    
T  10884377 atgagcaa 10884370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 5603056 - 5602944
Alignment:
Q  77 tgagatttgcactagcgtgagttatctcatgctgtgagagttaactcacgtaggagcattttggttttttcacttgggaatgagcaaaaatgtttgggta 176  Q
    |||||||||||||||||||||||| ||||| ||| | ||||||||||||  ||| ||||||||||  |||   |||||||||||||||    ||||||||    
T  5603056 tgagatttgcactagcgtgagttaactcatactgcgggagttaactcacacaggggcattttggtcatttactttgggaatgagcaaatccatttgggta 5602957  T
Q  177 aagaacataattc 189  Q
    |||| || |||||    
T  5602956 aagagcagaattc 5602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 33401595 - 33401640
Alignment:
Q  60 cgtgagttaactcatgctgagatttgcactagcgtgagttatctca 105  Q
    |||||||||||||||| ||  |||||||||||||||||||| ||||    
T  33401595 cgtgagttaactcatgttgccatttgcactagcgtgagttaactca 33401640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 26498312 - 26498182
Alignment:
Q  59 gcgtgagttaactcatgctgagatttgcactagcgtgagttatctcatgctgtgagagttaactcacgtaggagcattttggttttttcacttgggaatg 158  Q
    ||||||||||||||||||| |||||||| ||||||||||||| || | | || | ||||||||||||| ||| |||||||||| |||| | |||||||||    
T  26498312 gcgtgagttaactcatgctaagatttgcgctagcgtgagttaacttaagttgcgggagttaactcacgcaggggcattttggtctttttagttgggaatg 26498213  T
Q  159 agcaaaaatgtttgggtaaagaacataattc 189  Q
    ||||||||  ||||| |||||| ||||||||    
T  26498212 agcaaaaagttttggctaaagagcataattc 26498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 34131817 - 34131851
Alignment:
Q  144 tttcacttgggaatgagcaaaaatgtttgggtaaa 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  34131817 tttcacttgggaatgagcaaatatgtttgggtaaa 34131851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 28360157 - 28360260
Alignment:
Q  86 cactagcgtgagttatctcatgctgtgagagttaactcacgtaggagcattttggttttttcacttgggaatgagcaaaaatgtttgggtaaagaacata 185  Q
    ||||||||||||||| |||||| |||| ||||||||||||| ||| |||||||||| |||||||||| |||||||||||||  |||||||||||| || |    
T  28360157 cactagcgtgagttaactcatgttgtgggagttaactcacgcaggggcattttggtcttttcacttgagaatgagcaaaaacatttgggtaaagagcaga 28360256  T
Q  186 attc 189  Q
    ||||    
T  28360257 attc 28360260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 8241861 - 8241819
Alignment:
Q  58 tgcgtgagttaactcatgctgagatttgcactagcgtgagtta 100  Q
    |||||||||||||||| || ||||||| |||||||||||||||    
T  8241861 tgcgtgagttaactcacgcagagatttacactagcgtgagtta 8241819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 543
Target Start/End: Original strand, 46831169 - 46831300
Alignment:
Q  412 gaccgtttcgtgaaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgcaccggttacggtggta 511  Q
    ||||| || |||||||||||||| ||||| ||||| ||   ||||||||||||||||||||||||| | || || ||  ||||||||||||||||||||     
T  46831169 gaccgattggtgaaatggaacaatagaaaccaccaagatttcattcttaatgttgatggcagctgcattggaacccctccacgcaccggttacggtggtg 46831268  T
Q  512 ttctccgtaatagtgcaggcttgttcatctca 543  Q
    | ||||| ||||||||||| ||||| ||||||    
T  46831269 tcctccgcaatagtgcaggtttgtttatctca 46831300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 531
Target Start/End: Original strand, 48953283 - 48953390
Alignment:
Q  424 aaatggaacaacagaaatcaccatgaccacattcttaatgttgatggcagctgcttaggcactccctcacgcaccggttacggtggtattctccgtaata 523  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||||| | |||||||  ||||  | ||||| ||||| ||| || ||||||| ||||    
T  48953283 aaatggaacaacagaaaccaccaagattacattcttaatgttgatggcaaccgcttaggatctcctccccgcactggttatggtagtgttctccgcaata 48953382  T
Q  524 gtgcaggc 531  Q
    | ||||||    
T  48953383 gcgcaggc 48953390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 24857044 - 24856980
Alignment:
Q  116 gttaactcacgtaggagcattttggttttttcacttgggaatgagcaaaaatgtttgggtaaaga 180  Q
    ||||||||||| ||||| || |||||  |||||||||||| ||||||||||||| ||| ||||||    
T  24857044 gttaactcacgcaggagtatgttggtcatttcacttgggagtgagcaaaaatgtatggataaaga 24856980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 8460227 - 8460266
Alignment:
Q  61 gtgagttaactcatgctgagatttgcactagcgtgagtta 100  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  8460227 gtgagttaattcatgctgagatttgcattagcgtgagtta 8460266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 269184 - 269118
Alignment:
Q  114 gagttaactcacgtaggagcattttggttttttcacttgggaatgagcaaaaatgtttgggtaaaga 180  Q
    ||||||| ||||| ||| ||||||||||  |||||||||||||||||||||||  ||||||||||||    
T  269184 gagttaagtcacgcaggggcattttggtcatttcacttgggaatgagcaaaaacttttgggtaaaga 269118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 5960 - 5912
Alignment:
Q  132 gcattttggttttttcacttgggaatgagcaaaaatgtttgggtaaaga 180  Q
    |||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  5960 gcattttggtctttttacttgggaatgagcaaaaacgtttgggtaaaga 5912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 6000 - 6044
Alignment:
Q  145 ttcacttgggaatgagcaaaaatgtttgggtaaagaacataattc 189  Q
    ||||| |||||||||||||||| |||||| |||||| ||||||||    
T  6000 ttcacatgggaatgagcaaaaacgtttggataaagagcataattc 6044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University