View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_16 (Length: 506)

Name: NF4381_low_16
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_16
NF4381_low_16
[»] chr6 (8 HSPs)
chr6 (1-490)||(2884029-2884531)
chr6 (1-239)||(2865103-2865341)
chr6 (304-448)||(2864873-2865016)
chr6 (1-62)||(2859895-2859956)
chr6 (458-490)||(2864817-2864849)
chr6 (80-111)||(2909261-2909292)
chr6 (307-348)||(9762777-9762818)
chr6 (366-431)||(17215710-17215777)
[»] chr7 (12 HSPs)
chr7 (288-404)||(35496526-35496638)
chr7 (363-433)||(3692887-3692959)
chr7 (305-445)||(27123272-27123412)
chr7 (298-354)||(44537430-44537486)
chr7 (299-445)||(28770475-28770621)
chr7 (299-337)||(17157731-17157769)
chr7 (363-404)||(28663163-28663204)
chr7 (300-337)||(46416466-46416503)
chr7 (363-445)||(18801039-18801122)
chr7 (363-432)||(27337708-27337779)
chr7 (209-237)||(34037379-34037407)
chr7 (366-431)||(37158383-37158450)
[»] chr5 (8 HSPs)
chr5 (299-445)||(18229564-18229710)
chr5 (301-445)||(30104802-30104946)
chr5 (363-447)||(9276604-9276690)
chr5 (374-445)||(13480016-13480090)
chr5 (120-239)||(5411913-5412032)
chr5 (366-405)||(18963852-18963891)
chr5 (363-445)||(23117251-23117334)
chr5 (374-445)||(41583541-41583614)
[»] chr4 (9 HSPs)
chr4 (303-445)||(51834912-51835054)
chr4 (298-445)||(47995698-47995845)
chr4 (300-348)||(7444348-7444396)
chr4 (298-431)||(37440838-37440971)
chr4 (301-445)||(7852508-7852652)
chr4 (374-445)||(51736352-51736425)
chr4 (300-337)||(1696152-1696189)
chr4 (363-433)||(35777723-35777795)
chr4 (363-441)||(50341891-50341971)
[»] chr8 (6 HSPs)
chr8 (301-445)||(42636330-42636474)
chr8 (299-352)||(16723169-16723222)
chr8 (363-445)||(37813426-37813511)
chr8 (300-354)||(37427280-37427333)
chr8 (363-445)||(28207622-28207706)
chr8 (301-353)||(35592528-35592579)
[»] chr1 (9 HSPs)
chr1 (301-354)||(45640635-45640688)
chr1 (321-445)||(47187805-47187929)
chr1 (363-404)||(38491262-38491303)
chr1 (363-404)||(39150623-39150664)
chr1 (303-337)||(21304323-21304357)
chr1 (296-337)||(2568958-2568999)
chr1 (363-404)||(36563745-36563786)
chr1 (366-431)||(32562380-32562447)
chr1 (161-238)||(42888005-42888082)
[»] chr3 (3 HSPs)
chr3 (376-439)||(11132602-11132667)
chr3 (307-347)||(29611994-29612034)
chr3 (292-324)||(43804087-43804119)
[»] chr2 (8 HSPs)
chr2 (363-445)||(20064909-20064993)
chr2 (374-447)||(14295624-14295699)
chr2 (366-447)||(37993074-37993157)
chr2 (299-337)||(3882721-3882759)
chr2 (363-445)||(1334908-1334992)
chr2 (300-337)||(35317926-35317963)
chr2 (363-431)||(9173730-9173801)
chr2 (363-422)||(29239273-29239333)
[»] scaffold0735 (1 HSPs)
scaffold0735 (161-238)||(958-1035)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 2884531 - 2884029
Alignment:
Q  1 agcagagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggctcaaaactataggatgaataggtggaggaggcaagtgaaa 100  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884531 agcaaagaaaaacggtgagaaagctcaactggtggcagggaaagataaacaagaattggctcaaaactataggatgaataggtggaggaggcaagtgaaa 2884432  T
Q  101 aatatgaggaacttttttgggtcatgttaaccggtgcttctgggtattagttaagtagccaaaattagaaagaaaaagcaaagtcaaaattacaatcaac 200  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2884431 aatatgaggaacttttttgggtcatgttaaccggtgcctccgggtattagttaagtagccaaaattagaaagaaaaagcaaagtcaacattaaaatcaac 2884332  T
Q  201 nnnnnnncaagtttcaaaaagtaaaatacataattttcgnnnnnnnnncattttccgggggcactcggcactacttaacattttccaaattttttaataa 300  Q
           ||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2884331 tttttttcaagtttcaaaaagtaaaatacataattttcg-aaaaaaaacattttccgggggcactgggcactacttaacattttccaaattttttaataa 2884233  T
Q  301 gggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaag-nnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaa 399  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||||    
T  2884232 gggaaatgttaactagtgcccccaagacactctttaaacattttaaatggtaagtttttttttatgaaaaattgtgtatttaatgcattgtaaattgtaa 2884133  T
Q  400 tagttatttttgaaaaaataattgctaaatttggaatccttaaagaattttcgggaac-------------acccttttaataaaaatttgattggggag 486  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||             |||||||||||||||||||||||||||||    
T  2884132 tagttatttttgaaaaaacaattgctaaatttggaatccttaaagaattcccgggaacattaattaataagacccttttaataaaaatttgattggggag 2884033  T
Q  487 aatg 490  Q
    ||||    
T  2884032 aatg 2884029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2865341 - 2865103
Alignment:
Q  1 agcagagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggctcaaaactataggatgaataggtggaggaggcaagtgaaa 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2865341 agcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggctcaagactgtaggatgaataggtggaggaggcaagtgaaa 2865242  T
Q  101 aatatgaggaacttttttgggtcatgttaaccggtgcttctgggtattagttaagtagccaaaattagaaagaaaaagcaaagtcaaaattacaatcaac 200  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  2865241 aatatgaggaatttttttgggtcatgttaaccggtgcctccgggtattagttaagtagccaaagttagaaagaaaaagcaaagtcaacattaaaatcaac 2865142  T
Q  201 nnnnnnncaagtttcaaaaagtaaaatacataattttcg 239  Q
           ||||||||||||||||||||||||||||||||    
T  2865141 attttttcaagtttcaaaaagtaaaatacataattttcg 2865103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 304 - 448
Target Start/End: Complemental strand, 2865016 - 2864873
Alignment:
Q  304 aaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaatagt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||||    
T  2865016 aaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagttttttg-atgaaaaattgtgtatttaatgcattgtaaattgtaatagt 2864918  T
Q  404 tatttttgaaaaaataattgctaaatttggaatccttaaagaatt 448  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  2864917 tatttttgaaaaaataattgctaaatttgaaatccttaaagaatt 2864873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2859956 - 2859895
Alignment:
Q  1 agcagagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggctc 62  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2859956 agcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggctc 2859895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 490
Target Start/End: Complemental strand, 2864849 - 2864817
Alignment:
Q  458 acccttttaataaaaatttgattggggagaatg 490  Q
    |||||||||||||||||||||||||||||||||    
T  2864849 acccttttaataaaaatttgattggggagaatg 2864817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 2909292 - 2909261
Alignment:
Q  80 aggtggaggaggcaagtgaaaaatatgaggaa 111  Q
    ||||||||||||||||||||||||||||||||    
T  2909292 aggtggaggaggcaagtgaaaaatatgaggaa 2909261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 9762777 - 9762818
Alignment:
Q  307 tgttaactagtgcccccgagacactctttaaacattttaaat 348  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||    
T  9762777 tgttaacgagtgcccccgaaacactctttaaacatcttaaat 9762818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 17215710 - 17215777
Alignment:
Q  366 aaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaattt 431  Q
    ||||||| | |||| ||||||||| ||||||||||||||   ||||| ||||||||||| ||||||||    
T  17215710 aaaaattgtttattgaatgcattgaaaattgtaatagttgactttttaaaaaaataattactaaattt 17215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 404
Target Start/End: Original strand, 35496526 - 35496638
Alignment:
Q  288 aattttttaataagggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcat 387  Q
    |||||||||||  ||||||||||||| |||||||||| | ||||||||||||| |||||||||||||        |||||||||| |||| | |||||||    
T  35496526 aattttttaat--gggaaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaag--tttttaatgaaaaattgtgtaatgaatgcat 35496621  T
Q  388 tgtaaattgtaatagtt 404  Q
    || ||||||||||||||    
T  35496622 tgaaaattgtaatagtt 35496638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 433
Target Start/End: Complemental strand, 3692959 - 3692887
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt-atttttgaaaa-aataattgctaaatttgg 433  Q
    |||||||||| |||||| | ||||||| |||||||||||||| |||||| |||| ||||||||||||||||||    
T  3692959 atgaaaaattgtgtattgagtgcattggaaattgtaatagttgattttttaaaagaataattgctaaatttgg 3692887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 445
Target Start/End: Complemental strand, 27123412 - 27123272
Alignment:
Q  305 aatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaatagtt 404  Q
    ||||||||| |||||||||| | |||||||||| || |||||||||||||        | ||||| || |||| ||||||||||| ||||||||||||||    
T  27123412 aatgttaacgagtgcccccggggcactctttaagcactttaaatggtaag--tttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagtt 27123315  T
Q  405 --atttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
       ||||| ||| ||| ||| |||||||||| || ||||||||    
T  27123314 gactttttaaaagaatgattactaaatttgggatgcttaaaga 27123272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 44537486 - 44537430
Alignment:
Q  298 taagggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaag 354  Q
    |||||||||||||||| |||||||||| | |||||||||| || ||||||| |||||    
T  44537486 taagggaaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaag 44537430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 445
Target Start/End: Complemental strand, 28770621 - 28770475
Alignment:
Q  299 aagggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgta 398  Q
    ||||||||||||||| |||||| |||  ||||||||||| || | ||||| |||||        ||||||| || |||||| ||||||||| ||||||||    
T  28770621 aagggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagttttta--atgaaaagttgtgtattgaatgcattggaaattgta 28770524  T
Q  399 atagtt-atttttgaaaa-aataattgctaaatttggaatccttaaaga 445  Q
    |||||| | |||| |||| ||||||| |||| ||||| || ||||||||    
T  28770523 atagttgacttttcaaaagaataattactaattttgggatgcttaaaga 28770475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 17157731 - 17157769
Alignment:
Q  299 aagggaaatgttaactagtgcccccgagacactctttaa 337  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  17157731 aagggaaatgttaacgagtgcccccgaggcactctttaa 17157769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 28663163 - 28663204
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt 404  Q
    |||||||||| |||||| ||||||||| ||||||||||||||    
T  28663163 atgaaaaattgtgtattgaatgcattgaaaattgtaatagtt 28663204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 46416503 - 46416466
Alignment:
Q  300 agggaaatgttaactagtgcccccgagacactctttaa 337  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  46416503 agggaaatgttaacaagtgcctccgagacactctttaa 46416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 445
Target Start/End: Complemental strand, 18801122 - 18801039
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt-atttttgaaaa-aataattgctaaatttggaatccttaaaga 445  Q
    ||||||| || |||||| | || |||| |||||||||||||| | ||||||||| | |||||||||||||| |||||||||||||    
T  18801122 atgaaaagttgtgtattcattgtattgaaaattgtaatagttgacttttgaaaagagtaattgctaaattt-gaatccttaaaga 18801039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 27337779 - 27337708
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaatttg 432  Q
    ||||||| || ||||||||||| |||||||| ||||||||||   ||||| ||| |||||||| ||||||||    
T  27337779 atgaaaagttgtgtatttaatgtattgtaaactgtaatagttgatttttttaaagaataattgttaaatttg 27337708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 34037407 - 34037379
Alignment:
Q  209 aagtttcaaaaagtaaaatacataatttt 237  Q
    |||||||||||||||||||||||||||||    
T  34037407 aagtttcaaaaagtaaaatacataatttt 34037379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 37158383 - 37158450
Alignment:
Q  366 aaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaattt 431  Q
    |||||||||||||| | ||||||| ||||||||||||||   ||||| ||| ||||||| ||||||||    
T  37158383 aaaaattatgtattcactgcattgaaaattgtaatagttgactttttaaaataataattactaaattt 37158450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 445
Target Start/End: Original strand, 18229564 - 18229710
Alignment:
Q  299 aagggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgta 398  Q
    ||||||||||||||| |||||  ||| |||||||||||| || |||||||||||||        |||||||||| | |||| |||| |||| ||||||||    
T  18229564 aagggaaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagttttta--atgaaaaattgtttattgaatgtattggaaattgta 18229661  T
Q  399 atagtta--tttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||||||  ||||| ||| ||||||| |||||||||| || ||||||||    
T  18229662 atagttaactttttaaaagaataattactaaatttgggatgcttaaaga 18229710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 445
Target Start/End: Complemental strand, 30104946 - 30104802
Alignment:
Q  301 gggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaat 400  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||| |||||||        ||||||| || |||||| ||||||||| ||||||||||    
T  30104946 gggaaatgttaactagtgcccccggagcactctttaaacactttaagtggtaag--tttttaatgaaaagttgtgtattgaatgcattggaaattgtaat 30104849  T
Q  401 agtt--atttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
     |||   ||||| |||||||| || |||||||||| || ||||||||    
T  30104848 tgttgactttttaaaaaaatagttactaaatttgggatgcttaaaga 30104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 447
Target Start/End: Original strand, 9276604 - 9276690
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtta--tttttgaaaaaataattgctaaatttggaatccttaaagaat 447  Q
    ||||||| ||||||||| ||||||||| ||||| ||||||||   ||||| ||||||||||| |||||||||| || ||| ||||||    
T  9276604 atgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaatttgggatgcttgaagaat 9276690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 13480090 - 13480016
Alignment:
Q  374 tgtatttaatgcattgtaaattgtaatagtta---tttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||||| ||||||||| ||||| |||||||||   ||||| ||||||||||| ||||||||| ||| ||||||||    
T  13480090 tgtattgaatgcattgaaaattataatagttaattttttttaaaaaataattactaaatttgaaatgcttaaaga 13480016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 5411913 - 5412032
Alignment:
Q  120 ggtcatgttaaccggtgc-ttctgggtattagttaagtagccaaaattagaaagaaaaagcaaagtcaaaattacaatcaacnnnnnnncaagtttcaaa 218  Q
    ||||||||||||| |||| ||| ||| | ||||||||||| ||||| || ||||||||| ||||||||| |||| || ||||       ||| ||| |||    
T  5411913 ggtcatgttaaccagtgccttcggggaactagttaagtagtcaaaaataaaaagaaaaaacaaagtcaacatta-aagcaacatttttccaatttttaaa 5412011  T
Q  219 aagtaaaatacataattttcg 239  Q
    |||||||||||| ||||||||    
T  5412012 aagtaaaatacacaattttcg 5412032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Complemental strand, 18963891 - 18963852
Alignment:
Q  366 aaaaattatgtatttaatgcattgtaaattgtaatagtta 405  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  18963891 aaaaattgtgtatttaatgcattgaaaattgtaatagtta 18963852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 23117251 - 23117334
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagttatttttgaaaa-aataattgctaaatttggaatccttaaaga 445  Q
    ||||||||||||||||| |||| |||| |||||||||| ||||  ||| |||| ||||| ||||||||||  ||| ||||||||    
T  23117251 atgaaaaattatgtattaaatgtattggaaattgtaattgttaactttaaaaagaataactgctaaatttaaaatgcttaaaga 23117334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 41583614 - 41583541
Alignment:
Q  374 tgtatttaatgcattgtaaattgtaatagtta--tttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||||| ||||||||| || |||||||| |||  ||||||||  ||||||| |||||||||| |||||||||||    
T  41583614 tgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaatttgggatccttaaaga 41583541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 445
Target Start/End: Complemental strand, 51835054 - 51834912
Alignment:
Q  303 gaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaatag 402  Q
    ||||||||||| ||||  |||||||||||||||||||| ||||||| ||||         ||||||| || |||||||||||||||| ||||| ||||||    
T  51835054 gaaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaa--atttttaatgaaaagttgtgtatttaatgcattggaaattataatag 51834957  T
Q  403 tt--atttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    ||   ||||| ||| |||||||||||||||| | || ||||||||    
T  51834956 ttgactttttaaaagaataattgctaaatttaggatgcttaaaga 51834912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 445
Target Start/End: Original strand, 47995698 - 47995845
Alignment:
Q  298 taagggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgt 397  Q
    ||||| |||||||||| |||| ||| ||||| |||||||| || ||||||| |||||        ||||||| ||||||||| ||||||||| |||||||    
T  47995698 taaggaaaatgttaacaagtgtccctgagactctctttaagcactttaaattgtaagttttta--atgaaaagttatgtattgaatgcattgaaaattgt 47995795  T
Q  398 aatagtta--tttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||| |||  ||||| ||| | ||||| |||||||| |||| ||||||||    
T  47995796 aataattaactttttaaaagagtaattactaaatttagaatgcttaaaga 47995845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 7444348 - 7444396
Alignment:
Q  300 agggaaatgttaactagtgcccccgagacactctttaaacattttaaat 348  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  7444348 agggaaatgttaacgagtgctcccgagacactctttaaacactttaaat 7444396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 37440971 - 37440838
Alignment:
Q  298 taagggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgt 397  Q
    |||||||||||||||| |||||||  ||||||||||||||  | ||||||||||||         ||||||||||||||||| ||  ||||| |||||||    
T  37440971 taagggaaatgttaacgagtgcccttgagacactctttaagtactttaaatggtaa--atttataatgaaaaattatgtattgaacacattgaaaattgt 37440874  T
Q  398 aatagtt--atttttgaaaaaataattgctaaattt 431  Q
    |||||||   ||||| ||| ||||||| ||||||||    
T  37440873 aatagttgactttttaaaataataattactaaattt 37440838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 445
Target Start/End: Original strand, 7852508 - 7852652
Alignment:
Q  301 gggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaat 400  Q
    ||||||| ||||| |||||| ||| | |||||||||| || ||||||| |||||        ||||||| || |||||| ||||||||| ||||||||||    
T  7852508 gggaaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagttttta--atgaaaagttgtgtattaaatgcattgaaaattgtaat 7852605  T
Q  401 agtta--tttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||||  ||||| ||| ||||||| |||||||| | || ||||||||    
T  7852606 agttaattttttaaaagaataattactaaatttaggatgcttaaaga 7852652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 51736425 - 51736352
Alignment:
Q  374 tgtatttaatgcattgtaaattgtaatagtta--tttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||||| |||| |||| ||||| ||||||||   ||||| ||| |||||||||||||||||||||| |||||||    
T  51736425 tgtattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaatttggaatcattaaaga 51736352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 1696152 - 1696189
Alignment:
Q  300 agggaaatgttaactagtgcccccgagacactctttaa 337  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  1696152 agggaaatgttaaccagtgtccccgagacactctttaa 1696189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 433
Target Start/End: Original strand, 35777723 - 35777795
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtta--tttttgaaaaaataattgctaaatttgg 433  Q
    ||||||| || |||||| ||||||||  |||||||||||||||  ||||| ||| ||||||| ||||||||||    
T  35777723 atgaaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaagaataattactaaatttgg 35777795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 50341891 - 50341971
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaatttggaatcctta 441  Q
    ||||||| || |||||| ||||| ||| ||||||||||||||   ||||| ||| ||||||| ||||||||||||| ||||    
T  50341891 atgaaaagttgtgtattgaatgcgttggaaattgtaatagttgactttttaaaagaataattactaaatttggaatgctta 50341971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 445
Target Start/End: Original strand, 42636330 - 42636474
Alignment:
Q  301 gggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaat 400  Q
    ||||||||||||| ||||| ||||   |||||||||| || |||||||||||||        ||||||| || |||||| ||||||||||||||||||||    
T  42636330 gggaaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagttttta--atgaaaagttgtgtattaaatgcattgtaaattgtaat 42636427  T
Q  401 agtt--atttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    ||||   |||||  || ||||||| |||||||||| || ||||||||    
T  42636428 agttgacttttttgaataataattactaaatttgggatgcttaaaga 42636474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 16723169 - 16723222
Alignment:
Q  299 aagggaaatgttaactagtgcccccgagacactctttaaacattttaaatggta 352  Q
    ||||||||||||||| ||||||||||||||||| ||||| || |||||||||||    
T  16723169 aagggaaatgttaacgagtgcccccgagacactttttaagcactttaaatggta 16723222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 37813426 - 37813511
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtta---tttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    ||||||| || |||||| ||||||||| |||||||||| |||    ||||| ||| ||||||| |||||||||| |||||||||||    
T  37813426 atgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttttaaaagaataattactaaatttgggatccttaaaga 37813511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 37427333 - 37427280
Alignment:
Q  300 agggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaag 354  Q
    |||||||||||||| |||||| ||| |||||||||||| || |||||||||||||    
T  37427333 agggaaatgttaacgagtgcctccg-gacactctttaagcactttaaatggtaag 37427280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 445
Target Start/End: Complemental strand, 28207706 - 28207622
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    ||||||| || |||||| ||||||||| ||||||||||||||   ||||| ||| ||| |||| ||||||||| || ||||||||    
T  28207706 atgaaaagttgtgtattgaatgcattggaaattgtaatagttgactttttaaaagaattattgttaaatttgggatgcttaaaga 28207622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 35592579 - 35592528
Alignment:
Q  301 gggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaa 353  Q
    ||||||||||||| ||||||| ||||||||| ||||||  |||||||||||||    
T  35592579 gggaaatgttaacgagtgccctcgagacact-tttaaaatttttaaatggtaa 35592528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 45640688 - 45640635
Alignment:
Q  301 gggaaatgttaactagtgcccccgagacactctttaaacattttaaatggtaag 354  Q
    ||||||||||||| |||| |||||||||||||||||| |||||||||| |||||    
T  45640688 gggaaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaag 45640635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 445
Target Start/End: Original strand, 47187805 - 47187929
Alignment:
Q  321 cccgagacactctttaaacattttaaatggtaagnnnnnnnnatgaaaaattatgtatttaatgcattgtaaattgtaatagtt-atttttgaaa-aaat 418  Q
    |||| ||||||||||||||| || ||||||||||        ||||||||||||||||| ||||||||| ||||| |||||||| |||||| |||  |||    
T  47187805 cccgtgacactctttaaacacttaaaatggtaagttttta--atgaaaaattatgtattgaatgcattggaaattataatagttgattttttaaatgaat 47187902  T
Q  419 aattgctaaatttggaatccttaaaga 445  Q
    |||| |||||||||| || ||||||||    
T  47187903 aattactaaatttgggatgcttaaaga 47187929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 38491303 - 38491262
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt 404  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  38491303 atgaaaaattgtgtattgaatgcattgtaaattgtaatagtt 38491262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 39150664 - 39150623
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt 404  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  39150664 atgaaaatttatgtattgaatgcattgtaaattgtaatagtt 39150623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 21304323 - 21304357
Alignment:
Q  303 gaaatgttaactagtgcccccgagacactctttaa 337  Q
    ||||||||||| |||||||||||||||||||||||    
T  21304323 gaaatgttaacgagtgcccccgagacactctttaa 21304357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 2568999 - 2568958
Alignment:
Q  296 aataagggaaatgttaactagtgcccccgagacactctttaa 337  Q
    |||||||||||||||||| |||||| ||| ||||||||||||    
T  2568999 aataagggaaatgttaacgagtgcctccgggacactctttaa 2568958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 36563786 - 36563745
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt 404  Q
    |||||||||| |||||||||||||||| ||||| ||||||||    
T  36563786 atgaaaaattgtgtatttaatgcattgaaaattataatagtt 36563745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 32562380 - 32562447
Alignment:
Q  366 aaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaattt 431  Q
    ||||||| |||||| | ||||||| ||||||||||||||  |||||| ||| ||||||| ||||||||    
T  32562380 aaaaattgtgtattcactgcattgaaaattgtaatagttgaatttttaaaataataattactaaattt 32562447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 42888082 - 42888005
Alignment:
Q  161 aaaattagaaagaaaaagcaaagtcaaaattacaatcaacnnnnnnncaagtttcaaaaagtaaaatacataattttc 238  Q
    |||| |||||||||||| |||| |||| |||| || ||||       ||||||| |||||||||||||||||||||||    
T  42888082 aaaagtagaaagaaaaaacaaaatcaacattaaaagcaacatcttttcaagtttgaaaaagtaaaatacataattttc 42888005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 11132602 - 11132667
Alignment:
Q  376 tatttaatgcattgtaaattgtaatagtta--tttttgaaaaaataattgctaaatttggaatcct 439  Q
    |||| ||| ||||| |||||||||||||||  ||||||||| |||||||||||||||| |||||||    
T  11132602 tattcaatacattgaaaattgtaatagttaactttttgaaataataattgctaaatttagaatcct 11132667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 29611994 - 29612034
Alignment:
Q  307 tgttaactagtgcccccgagacactctttaaacattttaaa 347  Q
    ||||||| |||||||||| ||||||||||||||||| ||||    
T  29611994 tgttaacgagtgcccccgggacactctttaaacattctaaa 29612034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 43804119 - 43804087
Alignment:
Q  292 ttttaataagggaaatgttaactagtgcccccg 324  Q
    |||||||||||||||||||||| ||||||||||    
T  43804119 ttttaataagggaaatgttaacgagtgcccccg 43804087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 445
Target Start/End: Complemental strand, 20064993 - 20064909
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||||||||| |||||||||| ||||| ||||||||||||||   ||||| ||| ||||||| ||| |||| | |||||||||||    
T  20064993 atgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataattactatatttaggatccttaaaga 20064909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 14295699 - 14295624
Alignment:
Q  374 tgtatttaatgcattgtaaattgtaatagtta--tttttgaaaaaataattgctaaatttggaatccttaaagaat 447  Q
    |||||| ||||||||| |||||||||||||||   |||| ||| ||||||| |||||||||| || ||||||||||    
T  14295699 tgtattcaatgcattgaaaattgtaatagttaaccttttaaaagaataattactaaatttgggattcttaaagaat 14295624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 37993157 - 37993074
Alignment:
Q  366 aaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaatttggaatccttaaagaat 447  Q
    |||||||||||||| ||||||||| ||||||||||||||   ||||||||| |||| ||  ||||||| ||||  |||||||||    
T  37993157 aaaaattatgtattaaatgcattgaaaattgtaatagttgattttttgaaagaatagttattaaatttagaatgtttaaagaat 37993074  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 3882759 - 3882721
Alignment:
Q  299 aagggaaatgttaactagtgcccccgagacactctttaa 337  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  3882759 aagggaaatgttaacgagtgcccccgggacactctttaa 3882721  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 1334908 - 1334992
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt--atttttgaaaaaataattgctaaatttggaatccttaaaga 445  Q
    |||||||||| | |||| ||||||||| ||||||||||||||   ||||| ||| |||||||  ||||||||| || ||||||||    
T  1334908 atgaaaaattgtatattgaatgcattggaaattgtaatagttgatttttttaaagaataattattaaatttgggatgcttaaaga 1334992  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 35317963 - 35317926
Alignment:
Q  300 agggaaatgttaactagtgcccccgagacactctttaa 337  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  35317963 agggaaatgttaacgagtgcacccgagacactctttaa 35317926  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 9173730 - 9173801
Alignment:
Q  363 atgaaaaattatgtatttaat-gcattgtaaattgtaatagtta--tttttgaaaaaataattgctaaattt 431  Q
    |||||||||| ||||||| || | |||| ||||||||||||||   ||||| ||||||||||||||||||||    
T  9173730 atgaaaaattgtgtatttgattgtattgaaaattgtaatagttgattttttaaaaaaataattgctaaattt 9173801  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 29239273 - 29239333
Alignment:
Q  363 atgaaaaattatgtatttaatgcattgtaaattgtaatagtt-atttttgaaaaaataatt 422  Q
    |||||||||  |||||| ||||||||| |||||||||||||| | |||| |||||||||||    
T  29239273 atgaaaaatggtgtattgaatgcattgaaaattgtaatagttgactttttaaaaaataatt 29239333  T

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Target: scaffold0735 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 1035 - 958
Alignment:
Q  161 aaaattagaaagaaaaagcaaagtcaaaattacaatcaacnnnnnnncaagtttcaaaaagtaaaatacataattttc 238  Q
    |||| |||||||||||| |||| |||| |||| || ||||       ||||||| |||||||||||||||||||||||    
T  1035 aaaagtagaaagaaaaaacaaaatcaacattaaaagcaacatcttttcaagtttgaaaaagtaaaatacataattttc 958  T

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