View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_17 (Length: 504)
Name: NF4381_low_17
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Complemental strand, 10421124 - 10420633
Alignment:
| Q |
9 |
agcacagaccagtcttcaactccaatggtcccaacatcataatgacataccggaacttata------------aagtttcaattcaaaagttaaagttat |
96 |
Q |
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| T |
10421124 |
agcacagaccagtcttcaactccaatggtcccaacatcataatgacataccggaacttatacatttgtaatgaaagtttcaattcaaaagttaaagttat |
10421025 |
T |
|
| Q |
97 |
tatgcagatttttctagatgtctcagttcaaccacttgaactacaccatgagaactaacgtaacctttttgggtacatataatatatacatttgtagcat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10421024 |
tatgcagatttttctagatgtctcagttcaaccacttgaactacgccatgagaactaacgtaaccttttttggtacatataatatatacatttgtagcat |
10420925 |
T |
|
| Q |
197 |
ttccagctaggtgttcgtgtgggttttacattttccaaacctacacgtaatacatatggattttttatacgtttgcatgcagtacatgacacatgcacgg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10420924 |
ttccagctaggtgttcgtgtgggttttacattttccaaacctacacgtaatacatatggattttttatacgtttgcatgcggtacatgacacatgcacgg |
10420825 |
T |
|
| Q |
297 |
ggtgtagttgataacctacttcgtgtcaaattcaaacacaatgtaactcaaagcaagagtaacgtatatttcagctgttagcttattcaacattaacaaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10420824 |
ggtgtagttgataacctacttcgtgtcaaattcaaacacaatgtaactcaaagcaagagtaacgtatatttcagctgttagcttattcaacattaacaaa |
10420725 |
T |
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| Q |
397 |
tatctatgttctatcaaagaaaatatctctgcttgttatgggtgaactcctagtcaggtatatgtcaaaacattattcattattataatgat |
488 |
Q |
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| T |
10420724 |
tatctatgttctatcaaagaaaatatcgctgcttgttatgagtgaactcctagtcaggtatatgtcaaaacattattctttattataatgat |
10420633 |
T |
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