View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_2 (Length: 787)
Name: NF4381_low_2
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_2 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 439 - 777
Target Start/End: Original strand, 22416708 - 22417047
Alignment:
| Q |
439 |
aaagtcgatatgataatgggctctctttaaaaaatatcatccgccttctctctaaacttcacaagcgcct-catctttttccatcccctttaatccaaac |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22416708 |
aaagtcgatatgataatgggctctctttaaaaaatatcatccgccttctctctaaacttcacaagcgccttcatctttttccatcccctttaatccaaac |
22416807 |
T |
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| Q |
538 |
tccatccttaccatatgtaatccttccggtgcggtgatgtgatgagtggcgcgctgcccttcgcaccacccacatccaaattggccgtttctgtcgttgt |
637 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
22416808 |
tccatccttaccatatgtaatccttccggtgcggtgatgtgatgagtggcgcgctgccctccgcaccacccacatccaaatcggccgtttttgtcgttgt |
22416907 |
T |
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| Q |
638 |
tttcgaatgatagcagcggttgttttggtggttgaaccttttacggttgtcttaacccacacttctggtgtaaggtatcaaaacgacgtcggtgctttgc |
737 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
22416908 |
tttcgaatgatagcagcggttgttttggtggttgaaccttttacggttgtcttaacccacacttctcgtgtagggtatcaaaacgacgtcggtgctttgc |
22417007 |
T |
|
| Q |
738 |
atcttcgtcgattcgctgaattgtattcgtggtgtctgtg |
777 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22417008 |
atcttcgtcgattcgctgaattgtattcgtggtgtctgtg |
22417047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 22416290 - 22416637
Alignment:
| Q |
22 |
aacgtttctttgccacttcaattattgttgtttatttgaaggtgtactatggatctacaataaaggtcgtgtttggagacacaaataagcattggactta |
121 |
Q |
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| T |
22416290 |
aacgtttctttgccacttcaattattgttgtttatttgaaggtgtactatggatctacaataaaggtcgtgtttggagacacaaataagcattggactta |
22416389 |
T |
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| Q |
122 |
ccaaaacaacttaattcttaattttagatccttggagttgtcgcttactatgataattttggagaattagggcctgtttggcaaggtnnnnnnntaaaac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22416390 |
ccaaaacaacttaattcttaattttagatccttggagttgtcgcttactatgataattttggagaattagggcctgtttggcaaggtaaaaaaataaaac |
22416489 |
T |
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| Q |
222 |
ttgtagcttataagtttgtatgattaaaaaataatgtttggtaaatgtcatgttatcacgagcttatagtttatttcaccaacttatatc-ttatttttt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||| |
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| T |
22416490 |
ttgtagcttataagtttgtatgattaaaaaataatgtttggtaaatgtcatgttatcacgaacttatagtttatttcaccaacttatgtctttgtttttt |
22416589 |
T |
|
| Q |
321 |
agacgtttcaaatagcatttaagcttataaattatattttcttctttc |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416590 |
agacgtttcaaatagcatttaagcttataaattatattttcttctttc |
22416637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 15131468 - 15131392
Alignment:
| Q |
276 |
atcacgagcttatagtttatttcaccaacttatatcttattttttagacg---tttcaaatagcatttaagcttata |
349 |
Q |
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|||||||||||||| |||||| || |||||||| ||||||||| ||||| |||||| |||||||||||| |||| |
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| T |
15131468 |
atcacgagcttataacttattttactaacttatagcttatttttcagacgctatttcaagtagcatttaagcatata |
15131392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 25146377 - 25146421
Alignment:
| Q |
275 |
tatcacgagcttatagtttatttcaccaacttatatcttattttt |
319 |
Q |
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| T |
25146377 |
tatcacgagcttataacttatttcaccaacttataacttattttt |
25146421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 32627724 - 32627657
Alignment:
| Q |
257 |
gtttggtaaatgtcatgttatcacgagcttatagtttatttcaccaacttatatcttattttttagac |
324 |
Q |
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|||| |||||||| || | ||||||| |||||| |||||||||| | |||||||||||||||| |||| |
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| T |
32627724 |
gtttagtaaatgttatttcatcacgaacttataatttatttcacgagcttatatcttatttttaagac |
32627657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 44984470 - 44984437
Alignment:
| Q |
221 |
cttgtagcttataagtttgtatgattaaaaaata |
254 |
Q |
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| T |
44984470 |
cttgtagcttataagcttgtatgattaaaaaata |
44984437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 27005979 - 27005885
Alignment:
| Q |
225 |
tagcttataagtttgtatgattaaaaaa-taatgtttggtaaatgtcatgttatcacgagcttatagtttatttcaccaacttatatcttatttt |
318 |
Q |
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||||||||||| |||| ||||||||||| | |||||||||||| | ||| ||||||| ||||||| |||||||| | |||||| |||||||| |
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| T |
27005979 |
tagcttataagcttgtttgattaaaaaaattatgtttggtaaacgacattccatcacgaacttatagcttatttcaagagcttataacttatttt |
27005885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 339137 - 339072
Alignment:
| Q |
225 |
tagcttataagtttgtatgattaaaaaataatgtttggtaaatgtcatgttatcacgagcttatag |
290 |
Q |
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||||||||||| |||||||| |||| || || |||||||| |||||| || |||||||||||||| |
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| T |
339137 |
tagcttataagcttgtatgactaaagaaaaacatttggtaactgtcattttctcacgagcttatag |
339072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 21516786 - 21516721
Alignment:
| Q |
225 |
tagcttataagtttgtatgattaaaaaata-atgtttggtaaatgtcatgttatcacgagcttata |
289 |
Q |
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||||||||||| | |||||| ||||||| | ||||||||||| |||||| || ||||||||||||| |
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| T |
21516786 |
tagcttataagctcgtatgactaaaaaagacatgtttggtaattgtcattttttcacgagcttata |
21516721 |
T |
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