View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_20 (Length: 487)
Name: NF4381_low_20
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 33009658 - 33009199
Alignment:
| Q |
17 |
attctaaccggttgataagacatggcctgaaaacatgaaaggtatatctcaccttacaaattacaactcaattttataatatctcacattcaaatcagtc |
116 |
Q |
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| T |
33009658 |
attctaaccggttgataagacatggcctgaaaacatgaaaggtatatctcaccttacaaattacaactcaattttataatatctcacattcaaatcagtc |
33009559 |
T |
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| Q |
117 |
aagtctacccaagtaacaaagtttatcaagattatttgagctacggaccagtaggttagggagtaagtagggttgacaatgattatctatctacatccgc |
216 |
Q |
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| T |
33009558 |
aagtctacccaagtaacaaagtttatcaagattatttgagctacggaccagtaggttagggagtaagtagggttgacaatgattatctatctacatccgc |
33009459 |
T |
|
| Q |
217 |
tttttcaaattgttgtttgtcatccactattcacctcgtacaaatgatatatgtgcatactcctcatccatgttggtatcctctatacgagtatttaaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33009458 |
tttttcaaattgttgtttgtcatccactattcacctcgtacaaatgatatatgtgcatactcctcatccatgttggtatcctctatacgagtatttaaca |
33009359 |
T |
|
| Q |
317 |
tattttgaagcataccccgctacaagagtattaattagcatattttgaattatatgcgtgtatttgttgatatcattttgacaacacaaaattactaaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33009358 |
tattttgaagcataccccgctacaagagtattaattagcatattttgaattatatgcgtgtatttgttgatatcattttgacaacacaaaattactgaat |
33009259 |
T |
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| Q |
417 |
catatcataaacaaaaaattcagggaattaggttatggtttgtcagaaagttacattcat |
476 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33009258 |
catatcgtaaacaaaaaattcagggaattaggttatggtttgtcagaaagttacattcat |
33009199 |
T |
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