View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_22 (Length: 463)

Name: NF4381_low_22
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_22
NF4381_low_22
[»] chr7 (9 HSPs)
chr7 (18-166)||(17507405-17507552)
chr7 (18-166)||(17545662-17545809)
chr7 (177-304)||(27266578-27266705)
chr7 (177-304)||(27255148-27255278)
chr7 (18-166)||(15644696-15644843)
chr7 (190-301)||(27244683-27244791)
chr7 (395-452)||(27251301-27251358)
chr7 (366-436)||(27282631-27282698)
chr7 (21-51)||(552069-552099)
[»] chr8 (5 HSPs)
chr8 (18-159)||(136405-136545)
chr8 (18-166)||(18309431-18309577)
chr8 (18-159)||(25890549-25890689)
chr8 (18-166)||(37322038-37322188)
chr8 (130-166)||(8565290-8565326)
[»] chr3 (2 HSPs)
chr3 (18-166)||(26535522-26535669)
chr3 (18-166)||(14853389-14853537)
[»] chr2 (2 HSPs)
chr2 (18-166)||(13059404-13059551)
chr2 (17-61)||(36552232-36552276)
[»] chr1 (4 HSPs)
chr1 (22-166)||(39584498-39584641)
chr1 (185-298)||(14888626-14888736)
chr1 (190-298)||(14883365-14883469)
chr1 (130-166)||(38225648-38225684)
[»] chr6 (2 HSPs)
chr6 (18-166)||(13649523-13649673)
chr6 (18-160)||(18587837-18587981)
[»] chr5 (1 HSPs)
chr5 (18-166)||(32239255-32239405)
[»] scaffold0351 (1 HSPs)
scaffold0351 (130-166)||(13625-13661)
[»] chr4 (2 HSPs)
chr4 (21-73)||(47129228-47129282)
chr4 (130-163)||(19163798-19163831)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 17507405 - 17507552
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  17507405 catatgtggtggtctagtcctatgtcgtgtttaggcattggatagaccctttgtatttgttgtaaactggtgtgtgcggtggtatcttggcacaccttgt 17507504  T
Q  118 gcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||||||||| | ||||||||||| ||||||||||||||| |||||    
T  17507505 gcttttgatatca-tcttgcattgttattataatccatttttgattgtt 17507552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 17545809 - 17545662
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  17545809 catatgtggtggtctagtcctatgtcgtgtttaggcattggatagaccctttgtatttgttgtaaactggtgtgtgcggtggtatcttggcacaccttgt 17545710  T
Q  118 gcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||||||||| | ||||||||||| ||||||||||||||| |||||    
T  17545709 gcttttgatatca-tcttgcattgttattataatccatttttgattgtt 17545662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 177 - 304
Target Start/End: Complemental strand, 27266705 - 27266578
Alignment:
Q  177 tatgtcaa-aaggatattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctct 275  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27266705 tatgtcaataaggttattgaaattaaaagcaatatctagcaaagaa-gtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctat 27266607  T
Q  276 agctaaagccaattattgcaaacgttcac 304  Q
    ||||||||||| |||||||||||||||||    
T  27266606 agctaaagccatttattgcaaacgttcac 27266578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 177 - 304
Target Start/End: Complemental strand, 27255278 - 27255148
Alignment:
Q  177 tatgtcaa-aaggatattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagc--- 272  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       
T  27255278 tatgtcaataaggttattgaaattaaaaccaatatctagcaaagaa-gtgatgttgaatttgctattaagttgggttcgattgaaatagttactagcaat 27255180  T
Q  273 tctagctaaagccaattattgcaaacgttcac 304  Q
      ||||||||||||||||||||||||||||||    
T  27255179 aatagctaaagccaattattgcaaacgttcac 27255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 15644843 - 15644696
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | || |||||| |||| | ||||||| ||||||||||||||||    
T  15644843 catatgtggtggtctagtcctatgtcgtgtttaggcgttggatagactctttgtatcttttatgaaccattgttttcggtggtttcttggcacaccttgt 15644744  T
Q  118 gcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    |||   ||||||| |||||||  ||||||||||| ||||||||||||||    
T  15644743 gctaacgatatcacttttgca-agttaatataattcatttttgcttgtt 15644696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 27244791 - 27244683
Alignment:
Q  190 tattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctctagctaaagccaatt 289  Q
    |||||||||||||||||| | ||| || ||||| | |||||||||||| |||||||||  |||||||||||||||||||||  |||||||||| |||| |    
T  27244791 tattgaaattaaaagcaacagctaacagagaaa-taatgttgaatttgttattaagtttagttcgattgaaatagttacta--tctagctaaatccaaat 27244695  T
Q  290 attgcaaacgtt 301  Q
    ||||||||||||    
T  27244694 attgcaaacgtt 27244683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 27251358 - 27251301
Alignment:
Q  395 tctcaaaaaggaataataaaaatgttagagaaaaccaaacaacaaatttcacaggttc 452  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  27251358 tctcaaaaaggaataataaaaatgttacagaaaaccaaacaacaaatttcactggttc 27251301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 27282698 - 27282631
Alignment:
Q  366 gaaaaagactagaataattgggaaaaggctctcaaaaaggaataataaaaatgttagagaaaaccaaacaa 436  Q
    |||||||||||||||||| |||||||| ||||||||  |||||||| ||||||||||||||| ||||||||    
T  27282698 gaaaaagactagaataat-gggaaaagactctcaaa--ggaataatgaaaatgttagagaaacccaaacaa 27282631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 552069 - 552099
Alignment:
Q  21 atgtggtggtctagtcctatgtcgtgtttag 51  Q
    |||||||||||||||||||||||||||||||    
T  552069 atgtggtggtctagtcctatgtcgtgtttag 552099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 136545 - 136405
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  136545 catatgtggtggtctagtcctatgtcgtgtttaggcattggatagacactttgtatttgttgtaaactggtgtgtgcggtggtatcttggcacaccttgt 136446  T
Q  118 gcttttgatatcatttttgcattgttaatataatccattttt 159  Q
    ||||||||||||| | ||||||||||| ||||||||||||||    
T  136445 gcttttgatatca-tcttgcattgttattataatccattttt 136405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 18309431 - 18309577
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |  |||||||||| |||| ||| | ||||||||||||||||||||||||||||||    
T  18309431 catatgtggtggtctagtcctatgtcgtgtttaggcattggatagatcctttgtatttattgtaaactggtgtgtgcggtggtatcttggcacaccttgt 18309530  T
Q  118 gcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||||||||| | ||||||||||| |||||| |||||||| |||||    
T  18309531 gcttttgatatca-tcttgcattgttattataat-catttttgattgtt 18309577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 25890689 - 25890549
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| || ||||||||||| ||| |||   ||||||||||||||||||||||  ||||||    
T  25890689 catatgtggtggtccagtcctatgtcgtgtttaggcattggatagaccctttgtatttgatgtaaacttgtgtgtgcggtggtatcttggcattccttgt 25890590  T
Q  118 gcttttgatatcatttttgcattgttaatataatccattttt 159  Q
     |||||||||||| | ||||||||||| ||||||||||||||    
T  25890589 acttttgatatca-tcttgcattgttattataatccattttt 25890549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 37322188 - 37322038
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactct-ttgtatttgttgtgaaccg-ttgtgtgcggtggtatcttggcacacctt 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||| | ||||| || | || |   ||||||| |  |||||||||||    
T  37322188 catatgtggtggtctagtcctatgtcgtgtttaggcgttggatagactctattatatcttttgtggactgctttttctcggtggtttaatggcacacctt 37322089  T
Q  116 gtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    |||||   |  |||||||||||| | |||||||||||||||||||||||||    
T  37322088 gtgctaaagggatcatttttgcagtattaatataatccatttttgcttgtt 37322038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 8565290 - 8565326
Alignment:
Q  130 atttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8565290 atttttgaagtgttaatataatccatttttgcttgtt 8565326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 26535669 - 26535522
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||| ||||||||||||||||||||||| | || |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  26535669 catatgtggtagtctagtcctatgtcgtgtttaggcatttgatagactctttgtatttgttgtgaactgttgtgtgcggtggtaacttggcacaccttgt 26535570  T
Q  118 gcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||||||||| | || |||| ||||||||||||||||||| |||||    
T  26535569 gcttttgatatca-tcttacattattaatataatccatttttgattgtt 26535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 14853537 - 14853389
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||||||||||| ||||||||||  ||||||||| ||||||||||| | ||||||||| |||| ||||||||| |||||||||||||| |    
T  14853537 catatgtggtggtctagtcctacgtcgtgtttaagcgttggatagactctttgtatcttttgtgaacctttgtttgcggtggtttcttggcacacctttt 14853438  T
Q  118 gcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    |||   ||||||| ||||||| |||||||||||||||||||| ||||||    
T  14853437 gctgacgatatcacttttgcaatgttaatataatccattttttcttgtt 14853389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 13059551 - 13059404
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgt 117  Q
    |||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||| ||| | |||||||||||| ||||||||||| |||||    
T  13059551 catatgtggtggtctagtcctatgtcgtgtttaggcattggatagaccctttgtatttgttgtaaactggtgtgtgcggtggcatcttggcacatcttgt 13059452  T
Q  118 gcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||||||||| | | ||||||||| |||||| |||||||| |||||    
T  13059451 gcttttgatatca-tctagcattgttattataattcatttttgattgtt 13059404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 36552276 - 36552232
Alignment:
Q  17 acatatgtggtggtctagtcctatgtcgtgtttagacgttggata 61  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||    
T  36552276 acatatgtggtggtcgagtcctctgtcgtgtttagacattggata 36552232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 39584641 - 39584498
Alignment:
Q  22 tgtggtggtctagtcctatgtcgtgtttagacgttggataaactctttgtatttgttgtgaaccgttgtgtgcggtggtatcttggcacaccttgtgctt 121  Q
    |||||||||||||||||||||||||||||| | ||||||| || |||||  |||||||| ||| | |||||||||||||||||||||||| |||||||||    
T  39584641 tgtggtggtctagtcctatgtcgtgtttaggcattggatagaccctttgcttttgttgtaaactggtgtgtgcggtggtatcttggcacatcttgtgctt 39584542  T
Q  122 ttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||||| ||| ||||||||| |||||| |||||||| |||||    
T  39584541 ttgatatca-tttagcattgttattataattcatttttgattgtt 39584498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 14888626 - 14888736
Alignment:
Q  185 aaggatattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctctagctaaagc 284  Q
    |||| |||||||||||||||||||| |||  | ||||| ||||||||||||||||||||||||  ||| |||||||||||||||  | |||||||||| |    
T  14888626 aaggttattgaaattaaaagcaatacctaatagagaaa-tgatgttgaatttgctattaagttcagtttgattgaaatagttac--gatctagctaaatc 14888722  T
Q  285 caattattgcaaac 298  Q
    ||| ||||||||||    
T  14888723 caaatattgcaaac 14888736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 14883365 - 14883469
Alignment:
Q  190 tattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctctagctaaagccaatt 289  Q
    |||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||  |||||||||||| |||||||   |||||||||| |||| |    
T  14883365 tattgaaattaaaagcaatacctaacaa-gaaa-tgatgttgaatttgctattaagttcagttcgattgaaagagttact--ttctagctaaatccaaat 14883460  T
Q  290 attgcaaac 298  Q
    |||||||||    
T  14883461 attgcaaac 14883469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 38225684 - 38225648
Alignment:
Q  130 atttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  38225684 attttagcagtgttaatataatccatttttgcttgtt 38225648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 13649523 - 13649673
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactct-ttgtatttgttgtgaac--cgttgtgtgcggtggtatcttggcacacct 114  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||| | ||||||||  | || | | ||||||| | ||||||||| |    
T  13649523 catatgtggtggtcgagtcctatgtcgtgtttaggcgttggatagactctattgtatcttttgtgaactgcattttct-cggtggttttttggcacactt 13649621  T
Q  115 tgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||   || |||||| ||||| ||||| |||||||||| ||||||||||    
T  13649622 tgtgctaaagagatcattcttgcagtgttattataatccatctttgcttgtt 13649673  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 18587981 - 18587837
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactct-ttgtatttgttgtgaaccg-ttgtgtgcggtggtatcttggcacacctt 115  Q
    |||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||  ||||||| |  | | | ||||||| ||||| ||||||||    
T  18587981 catatgtggtggtctagtcctatgtcgtgtttaggcgttggctagactctcttgtattttgtgtgaactgccttttttcggtggtttcttgacacacctt 18587882  T
Q  116 gtgcttttgatatcatttttgcattgttaatataatccatttttg 160  Q
    |||||   || |||| || || | |||||||||||||| ||||||    
T  18587881 gtgctaaggagatcacttgtgtagtgttaatataatccgtttttg 18587837  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 32239405 - 32239255
Alignment:
Q  18 catatgtggtggtctagtcctatgtcgtgtttagacgttggataaactct-ttgtatttgttgtgaaccg-ttgtgtgcggtggtatcttggcacacctt 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||| |  ||||||| |  | | | ||||||| ||||||||||||||    
T  32239405 catatgtggtggtctagtcctatgtcgtgtttaggcgttggatagactctattatatcttatgtgaactgaattttttcggtggtttcttggcacacctt 32239306  T
Q  116 gtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 166  Q
    || ||   || || | ||||||  ||||||||||||| |||||| ||||||    
T  32239305 gtactaaagagataacttttgcggtgttaatataatctatttttacttgtt 32239255  T

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Target: scaffold0351 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 13625 - 13661
Alignment:
Q  130 atttttgcattgttaatataatccatttttgcttgtt 166  Q
    ||||||||| |||||||||||||||||||||||||||    
T  13625 atttttgcagtgttaatataatccatttttgcttgtt 13661  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 47129282 - 47129228
Alignment:
Q  21 atgtggtggtctagtcctatgtcgtgtttagacgttggataaa--ctctttgtat 73  Q
    ||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  47129282 atgtggtggtctagtcctatgtcgtgtttaagcattggataaattctctttgtat 47129228  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 19163798 - 19163831
Alignment:
Q  130 atttttgcattgttaatataatccatttttgctt 163  Q
    ||||||||| ||||||||||||||||||||||||    
T  19163798 atttttgcagtgttaatataatccatttttgctt 19163831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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