View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_27 (Length: 407)
Name: NF4381_low_27
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 39751061 - 39751459
Alignment:
| Q |
1 |
gcataggatatgcaacattggcaaaccttgctcctcaatatggactttgtaagctacttttttaaaatatatgtttttcttccccttatcttcttctaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751061 |
gcataggatatgcaacattggcaaaccttgctcctcaatatggactttgtaagctacttttttaaaatatatgtttttcttccccttatcttcttctaag |
39751160 |
T |
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| Q |
101 |
gaaattatattataattgatttactttatatacaacttttgcgcaaaaataaaattacattatcaattaattataactatatgatcataatcaatttgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751161 |
gaaattatattataattgatttactttatatacaacttttgcgcaaaaataaaattacattatcaattaattataactatatgatcataatcaatttgtg |
39751260 |
T |
|
| Q |
201 |
cgg-----aatgaaatgaaatagatacgagtgttgtaccaccgcttatatacgctgtaatgggaacatcaagagaaatagcaattggtcctgtggccgtg |
295 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751261 |
cggaatgaaatgaaatgaaatagatacgagtgttgtaccaccgcttatatacgctgtaatgggaacatcaagagaaatagcaattggtcctgtggccgtg |
39751360 |
T |
|
| Q |
296 |
gtttcgttgctgttatcatcgatggttcaaaaattagtagacccttctactgatccaattggttatacaaagctcatttttcttgccacactctctgct |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39751361 |
gtttcgttgctgttatcatcgatggttcaaaaattagtagacccttctactgatccaattggttatacaaagctcatttttcttgccacactctttgct |
39751459 |
T |
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