View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_29 (Length: 398)
Name: NF4381_low_29
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 34540085 - 34540466
Alignment:
| Q |
1 |
actttaaagaaagcttatattagttatacaaaaaacccaattagaaaataaaaagatgaaatctgagacaaatactttaagaacttaatcactaatgaaa |
100 |
Q |
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| T |
34540085 |
actttaaagaaagcttatattagttatacaaaaaactcaattagaaaataaaaagatgaaatctgagacaaatactttaagaacttaatcactaatgaaa |
34540184 |
T |
|
| Q |
101 |
tttctcaagaatcttggacgtatatttggaaattacgcatatgtttggtatcgtagtaggtatgtcagaatcatgctgacagactttgatttggcagaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
34540185 |
tttctcaagaatcttggacgtatatttggaaattacgcatatgtttggtattgtagtaggtatgtcagaatcatgctgagagatcttgatttggcagaag |
34540284 |
T |
|
| Q |
201 |
ttacatggtgaagtttttgaaaaatcacggtggatcactgtgattctgaaatactcaccctgatattaaacatacatcatttctcttagctactctgtaa |
300 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34540285 |
ttacatggtgaagtttttaaaaaatcacggtggattactgtgattctgaaatactcaccctgataacaaacatacatcatttctcttagctactctgtaa |
34540384 |
T |
|
| Q |
301 |
tttttcttatggcaaacatgcttggtctcttgtgttatcaggaaactcttttagcgtccactttccctttctgcagtgatga |
382 |
Q |
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| T |
34540385 |
tttttcttatggcaaacatgcttggtctcttgtgtcatcagaaaattcttttagcgtccacttgccctttctgcagtgatga |
34540466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 48569544 - 48569603
Alignment:
| Q |
218 |
tgaaaaatcacggtggatcactgtgattctgaaatactcaccctgatattaaacatacat |
277 |
Q |
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| T |
48569544 |
tgaaaaatcacggtggatcactgtgattctaacatattcaccgtgatatcagacatacat |
48569603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 37616319 - 37616381
Alignment:
| Q |
215 |
ttttgaaaaatcacggtggatcactgtgattctgaaatactcaccctgatattaaacatacat |
277 |
Q |
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| T |
37616319 |
ttttgcaaaattacgatggatcgcggtgattctgatatactcaccgtgatattaaacgtacat |
37616381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 17464035 - 17463996
Alignment:
| Q |
208 |
gtgaagtttttgaaaaatcacggtggatcactgtgattct |
247 |
Q |
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| T |
17464035 |
gtgaagtttttgaaaaatcacgttggatcaccgtgattct |
17463996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 28012615 - 28012676
Alignment:
| Q |
215 |
ttttgaaaaatcacggtggatcactgtgattctgaaatactcaccctgatattaaacataca |
276 |
Q |
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||||||||||||||| ||||||| |||||| |||| ||| ||||| ||| || ||||||||| |
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| T |
28012615 |
ttttgaaaaatcacgatggatcattgtgatactgacatattcaccgtgacatcaaacataca |
28012676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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