View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_31 (Length: 382)
Name: NF4381_low_31
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 29606050 - 29606421
Alignment:
| Q |
1 |
catccaaattaccaactataatccctgctgcaccttccaagttgccaacggcagcttcaccaacttctactacaccatccgctgctaaaaaaccacctat |
100 |
Q |
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| T |
29606050 |
catccaaattaccaactataatccctgctgcaccttccaagttgccaacggcagcttcaccaacttctagtacaccatccgctgctaaaaaaccacctat |
29606149 |
T |
|
| Q |
101 |
tgtcgtagcaacttctcccttgtctagcaaacaaccaaccaccactcaaccgcctacaactgcaaaatcatcccctgtaaaatcaccagttcctaaagtt |
200 |
Q |
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| T |
29606150 |
tgtcgtagcaacttctcccttgtctagcaaacaaccaaccaccactcaaccgcctacaactgcaaaatcatcccctgtaaaatcaccagttcctaaagtt |
29606249 |
T |
|
| Q |
201 |
acgtctccagcatcttcccctgtgaagtcaccagtccccaaagtcgcgaccccaacatctgctcccgtgaagtcaccagttccaaaagctacgactccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29606250 |
acgtctccagcatcttcccctgtgaagtcaccagtccccaaagtcgcgaccccaacatctgctcccgtgaagtcaccagttccaaaagctacgactccaa |
29606349 |
T |
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| Q |
301 |
catctgcccctgtgaaaccgccagttccaaaggttgcaactccaacggttgcaccggctaaaccacaggttc |
372 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29606350 |
catctgctcctgtgaaaccgccagttccaaaggttgcaactccaacggttgcaccggctaaaccactggttc |
29606421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 29606462 - 29606512
Alignment:
| Q |
278 |
agttccaaaagctacgactccaacatctgcccctgtgaaaccgccagttcc |
328 |
Q |
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|||||||||| |||| |||||||||||||| ||| ||||||| |||||||| |
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| T |
29606462 |
agttccaaaaactacaactccaacatctgctcctttgaaaccaccagttcc |
29606512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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