View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_33 (Length: 379)
Name: NF4381_low_33
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 6351938 - 6352300
Alignment:
| Q |
1 |
gtgtagctaaaatgtgatggctcaggagtagggctccgtaattttgtgtgaattacttcaaataatttagaatgaatagtaatggaaagtggagtatgta |
100 |
Q |
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| T |
6351938 |
gtgtaactaaaatgtgatggctcaggagtagggctccgtaattttgtgtgaattacttcaaataatttagaatgaatagtaatggaaagtggagtatgta |
6352037 |
T |
|
| Q |
101 |
atcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacatttttgacaaattg |
200 |
Q |
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| T |
6352038 |
atcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacatttttgac-aattg |
6352136 |
T |
|
| Q |
201 |
accattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatatgttgcattttattacaaatgacagaattattatttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6352137 |
accattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatagtttgcattttattacaaatgacagaattattatttga |
6352236 |
T |
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| Q |
301 |
cgtaacgcctaaagtataaggagatgaatgcactgagagcttagtcacatggcaggaagatcct |
364 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6352237 |
cgtaacgcctaaagtataaggagatgaatgcagtgagagcttagtcacatggcaggaagatcct |
6352300 |
T |
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