View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_35 (Length: 369)
Name: NF4381_low_35
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_35 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 36 - 369
Target Start/End: Complemental strand, 243506 - 243170
Alignment:
| Q |
36 |
gtagaaacggcagtctctgcaatcattatataatttcgattgctaaactcccaagaacaccctaagtgggccaaatcgtgcacggaagacataaaagtct |
135 |
Q |
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| T |
243506 |
gtagaaacggcagtctctacaatcattata--atttcgattgttaaactcccaagaacgccctaagtggacaaaatcgtgcacggaagacataaaagtct |
243409 |
T |
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| Q |
136 |
tnnnnnnntat--tttcaaaggacttagcag---gaaaaccagcacacactagagtacgaaagtagaaaattgcagattgaaattcacgccccagtatat |
230 |
Q |
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| T |
243408 |
taaaaaaatatattttcaaaggacttagtagaaggaaaaccagcacacactagagtacgaaagtagaaaattgcatattgaaattcacgctccagtatat |
243309 |
T |
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| Q |
231 |
aatgtgtcaatgcaacattttaccatttgagctaaacacgcaacatgtttttcgaatgttgaaagtgcttgcggtcataattagggttgtaattgtaaag |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
243308 |
aatgtgtcaatgcaacattttaccatttgagctaaacacgcaacatgtttttcgattgttgaaagtgcttgcggtcacaattagagttgtaattgtaaag |
243209 |
T |
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| Q |
331 |
ccacaacttaaactacaactagagaaactaaaaaataaa |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
243208 |
ccacaacttaaactacaactagagaaactaaaaaataaa |
243170 |
T |
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