View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_36 (Length: 366)
Name: NF4381_low_36
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 35 - 347
Target Start/End: Original strand, 31770219 - 31770532
Alignment:
| Q |
35 |
atacaaattaacataacatgagtcataaattaaaagttactaacacttcaacaactactatatattccatctcataatattttcactcattttttcctaa |
134 |
Q |
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| T |
31770219 |
atacaaattaacataacatgagtcataaattaaaagttactaacacttcaacaactactatatattccatctcataatattttcactcattttttcctaa |
31770318 |
T |
|
| Q |
135 |
aa-aactgagttgcacacagattttcctacagaaatgtcagaggtaaaagaccctgcgataaagctctttggcaggacaattccgcttcttccactgatc |
233 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770319 |
aaaaactgagttgcacacagattttcctacagaaatgtcagaggtaaaagaccctgcgataaagctctttggcaggacaattccgcttcttccactgatc |
31770418 |
T |
|
| Q |
234 |
atccctgccaatgactcttcatctccctcttcttctccgccagaattcacctctgcaatacaacatgaaactgaggtacgtgccatgaaggtttcatatg |
333 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770419 |
atccctgccaacgactcttcatttccctcttcttctccgccagaattcacctctgcaatacaacatgaaactgaggtacgtgccatgaaggtttcatatg |
31770518 |
T |
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| Q |
334 |
attgagtttctgta |
347 |
Q |
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|||||||||||||| |
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| T |
31770519 |
attgagtttctgta |
31770532 |
T |
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