View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_38 (Length: 364)
Name: NF4381_low_38
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 198 - 344
Target Start/End: Original strand, 35021701 - 35021847
Alignment:
| Q |
198 |
tgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttctctacaccaacatctccctcttcctcacaatccc |
297 |
Q |
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| T |
35021701 |
tgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttctctacaccaacatctccctcttcctcacaatccc |
35021800 |
T |
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| Q |
298 |
caactacctcgtcactcacatcgctactaaccgctccatcgcacgtg |
344 |
Q |
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| T |
35021801 |
caactacctcgtcactcccatcgccactaaccgctccatcgcacgtg |
35021847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 35021598 - 35021638
Alignment:
| Q |
86 |
ccaacaaccaccacctccctccccacaatcggcgtcacata |
126 |
Q |
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| T |
35021598 |
ccaacaaccaccacctccctccccacaatcggcgtcacata |
35021638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 35021525 - 35021554
Alignment:
| Q |
13 |
catcatgtttcatcacagtaccttcatgat |
42 |
Q |
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| T |
35021525 |
catcatgtttcatcacagtaccttcatgat |
35021554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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