View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_43 (Length: 320)

Name: NF4381_low_43
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_43
NF4381_low_43
[»] chr1 (10 HSPs)
chr1 (18-313)||(2020818-2021115)
chr1 (109-313)||(2007774-2007978)
chr1 (177-291)||(3363965-3364079)
chr1 (156-313)||(3217185-3217342)
chr1 (250-313)||(3380264-3380327)
chr1 (208-313)||(3366390-3366495)
chr1 (247-297)||(2947232-2947282)
chr1 (247-297)||(3353406-3353456)
chr1 (267-303)||(1794138-1794174)
chr1 (54-115)||(2007658-2007720)
[»] chr2 (3 HSPs)
chr2 (177-312)||(20924478-20924613)
chr2 (171-313)||(20936082-20936224)
chr2 (171-313)||(20954323-20954465)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 2020818 - 2021115
Alignment:
Q  18 caatataggtatagttacgattaattggattagagtcctata--aatcagactcatgtatcttcctattcatgttgtatcgatcaatacaatatgattta 115  Q
    |||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2020818 caatataggtatagttacgatttattgcattagagtcctatataaatcagactcatgtatcttcctattcatgttgtatcaatcaatacaatatgattta 2020917  T
Q  116 tggatttggcacaatttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatcca 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2020918 tggatttggcacaatttcatgtaggcagcacaggaggagaatacggtcgttttagcacctgcctcctattgttgggaaaatgtctttttggagccatcca 2021017  T
Q  216 tacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgcta 313  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2021018 tacccatccaagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattcgcctatgcta 2021115  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 109 - 313
Target Start/End: Original strand, 2007774 - 2007978
Alignment:
Q  109 tgatttatggatttggcacaatttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggag 208  Q
    |||||||| ||||||  |||||| ||||||||||  ||| ||| |||| ||| ||||||||||||| |||| |||||| |||||| || ||||| |||||    
T  2007774 tgatttatagatttgtaacaattgcatgtaggcaaaacatgagaagaaaactatcgttttagcacccgccttcttttgctgggaagatatctttctggag 2007873  T
Q  209 ccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgccta 308  Q
    |||||||| | || || ||||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||     
T  2007874 ccatccatgctcacccgagtgcgacatgtagggattgaaggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctg 2007973  T
Q  309 tgcta 313  Q
    |||||    
T  2007974 tgcta 2007978  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 3363965 - 3364079
Alignment:
Q  177 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 276  Q
    |||||| ||||||||||||| | |||| ||||||| | || |||||  ||||||||||||||  |||  | |||||||||||  | ||| ||||||||||    
T  3363965 cctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattaga 3364064  T
Q  277 ttttatgagatttct 291  Q
    |||||| ||||||||    
T  3364065 ttttatcagatttct 3364079  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 313
Target Start/End: Complemental strand, 3217342 - 3217185
Alignment:
Q  156 atactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctc 255  Q
    |||||| | ||||| |||| ||||||| ||||||| || ||||||||||||||||| || | ||| ||| |||||| ||||||   ||  |||| |||||    
T  3217342 atactgaccttttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgcccctccgagtgcgccatgtgagcataaaaggaatctc 3217243  T
Q  256 tggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgcta 313  Q
    ||  |  | | |||||||||||||||| |||||||||||| | ||||| || ||||||    
T  3217242 tgacaatacatctgaattagattttatcagatttctacttatgtattctcccatgcta 3217185  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 3380264 - 3380327
Alignment:
Q  250 catctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgcta 313  Q
    |||||||||||| ||| | ||||||||||||||  | ||||||||||||||||| |||||||||    
T  3380264 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgcta 3380327  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 3366390 - 3366495
Alignment:
Q  208 gccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcct 307  Q
    |||| |||| ||||| | |||||||||||||   || || |||||||||||||| ||| | ||| ||||||||||  | |||||||||| |||||| |||    
T  3366390 gccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagattttattcggtttctacttcgctattctcct 3366489  T
Q  308 atgcta 313  Q
    ||||||    
T  3366490 atgcta 3366495  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 2947282 - 2947232
Alignment:
Q  247 aggcatctctggtatgaaagctgaattagattttatgagatttctacttct 297  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||    
T  2947282 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttct 2947232  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 3353406 - 3353456
Alignment:
Q  247 aggcatctctggtatgaaagctgaattagattttatgagatttctacttct 297  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||    
T  3353406 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttct 3353456  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 1794138 - 1794174
Alignment:
Q  267 ctgaattagattttatgagatttctacttctctattc 303  Q
    |||||||||||||||| |||||||||||||| |||||    
T  1794138 ctgaattagattttatcagatttctacttctatattc 1794174  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 2007658 - 2007720
Alignment:
Q  54 cctataaatcaga--ctcatgtatcttcctattcatgttgtatcgatcaatacaatatgattta 115  Q
    |||||||||||||  ||||||||||||| | ||||| || |||| |||||||||||||||||||    
T  2007658 cctataaatcagagactcatgtatcttctttttcatctt-tatcaatcaatacaatatgattta 2007720  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 312
Target Start/End: Original strand, 20924478 - 20924613
Alignment:
Q  177 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 276  Q
    |||||| |||||||||| || |||||| |||||||   || | | || || ||| |||||||  |||  ||| |||||||||||  ||| ||||||||||    
T  20924478 cctcctattgttgggaagatatcttttcggagccagatatgctcctcaaattgcaacatgtggagatacaagacatctctggtaccaaatctgaattaga 20924577  T
Q  277 ttttatgagatttctacttctctattcgcctatgct 312  Q
    |||||| |||||||||||||||||||| ||| ||||    
T  20924578 ttttatcagatttctacttctctattcacctgtgct 20924613  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 20936082 - 20936224
Alignment:
Q  171 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 270  Q
    |||||||  ||| ||||||||||||  |||||| || |||| |||| ||||| | |||||||||||||  ||| || ||||||| |||||  |||   ||    
T  20936082 cacctgctgcctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattgga 20936181  T
Q  271 attagattttatgagatttctacttctctattcgcctatgcta 313  Q
    |||||||||||| | |||||||||||| ||||| ||| |||||    
T  20936182 attagattttatcaaatttctacttctatattctcctgtgcta 20936224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 20954323 - 20954465
Alignment:
Q  171 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 270  Q
    |||||||| ||| |||||||||| || | |||| ||  ||| |||| ||||| |||||||||||||||  |||||| ||||||| |||||  ||    ||    
T  20954323 cacctgccgcctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttgga 20954422  T
Q  271 attagattttatgagatttctacttctctattcgcctatgcta 313  Q
    |||||||||||| | |||||||||||| ||||| || ||||||    
T  20954423 attagattttatcaaatttctacttctatattctcccatgcta 20954465  T

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