View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_44 (Length: 315)
Name: NF4381_low_44
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 37901930 - 37902218
Alignment:
| Q |
11 |
catcatcaactcaaagacatcccatttaatatttggaatctctatatttttggcttccttttcctgcattatacattgcaagacattactaaggatattt |
110 |
Q |
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| T |
37901930 |
catcatcaactcaaagacatcccatttaatatttggaatctctatatttttggcttccttttcctgcattatacattgcaagacattactaaggatattt |
37902029 |
T |
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| Q |
111 |
acacttaatttcaaaagatccattagtcctatttcaattgcaaagtgattgagaggctttcaaattttccaaaatgcatgtggggcaagaaaattagtaa |
210 |
Q |
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| T |
37902030 |
acacttaattccaaaagatccattagtcctatttcaattgcaaagtgattgagaggctttcaaattttccaaaatgcatgtggggcaagaaaattagtaa |
37902129 |
T |
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| Q |
211 |
ccacttagcctattaaagacgccaatcaaacagctgccatcacaatcaactgtatacttgaacatttgcaaaagaaagttactagttac |
299 |
Q |
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| T |
37902130 |
ccacttagcctattaaagacgccaatcaaacagctgccatcacaatcaactgtatacttgaacatttgcaaaagaaagttactagttac |
37902218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 37908441 - 37908729
Alignment:
| Q |
11 |
catcatcaactcaaagacatcccatttaatatttggaatctctatatttttggcttccttttcctgcattatacattgcaagacattactaaggatattt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37908441 |
catcatcaactcaaagacatcccatttaatatttggaatctctatatttttggcttccttttcctgcattatacattgcaagacattactaaggatattt |
37908540 |
T |
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| Q |
111 |
acacttaatttcaaaagatccattagtcctatttcaattgcaaagtgattgagaggctttcaaattttccaaaatgcatgtggggcaagaaaattagtaa |
210 |
Q |
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| T |
37908541 |
acacttaattccaaaagatccattagtcctatttcaattgcaaagtgattgagaggctttcaaattttccaaaatgcatgtggggcaagaaaattagtaa |
37908640 |
T |
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| Q |
211 |
ccacttagcctattaaagacgccaatcaaacagctgccatcacaatcaactgtatacttgaacatttgcaaaagaaagttactagttac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37908641 |
ccacttagcctattaaagacgccaatcaaacagctgccatcacaatcaactgtatacttgaacatttgcaaaagaaagttactagttac |
37908729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 47276905 - 47276861
Alignment:
| Q |
11 |
catcatcaactcaaagacatcccatttaatatttggaatctctat |
55 |
Q |
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||||||||||||||| || |||||| |||||||||| |||||||| |
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| T |
47276905 |
catcatcaactcaaaaacttcccatctaatatttgggatctctat |
47276861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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